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<h1>Three experimental datasets from two water sediment systems and one soil</h1>
</div>
<p>The datasets were used for the comparative validation of several kinetic evaluation
software packages (Ranke, 2014).</p>
<pre class="usage"><span class='no'>test_data_from_UBA_2014</span></pre>
<h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2>
<p>A list containing three datasets as an R6 class defined by <code><a href='mkinds.html'>mkinds</a></code>.
Each dataset has, among others, the following components</p><dl class='dl-horizontal'>
<dt><code>title</code></dt><dd><p>The name of the dataset, e.g. <code>UBA_2014_WS_river</code></p></dd>
<dt><code>data</code></dt><dd><p>A data frame with the data in the form expected by <code><a href='mkinfit.html'>mkinfit</a></code></p></dd>
</dl>
<h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2>
<p>Ranke (2014) Prüfung und Validierung von Modellierungssoftware als Alternative
zu ModelMaker 4.0, Umweltbundesamt Projektnummer 27452</p>
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
<pre class="examples"><div class='input'>
<span class='co'># This is a level P-II evaluation of the dataset according to the FOCUS kinetics</span>
<span class='co'># guidance. Due to the strong correlation of the parameter estimates, the</span>
<span class='co'># covariance matrix is not returned. Note that level P-II evaluations are</span>
<span class='co'># generally considered deprecated due to the frequent occurrence of such</span>
<span class='co'># large parameter correlations, among other reasons (e.g. the adequacy of the</span>
<span class='co'># model).</span>
<span class='no'>m_ws</span> <span class='kw'><-</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span>(<span class='kw'>parent_w</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='st'>"parent_s"</span>),
<span class='kw'>parent_s</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='st'>"parent_w"</span>))</div><div class='output co'>#> <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'> <span class='no'>f_river</span> <span class='kw'><-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>m_ws</span>, <span class='no'>test_data_from_UBA_2014</span><span class='kw'>[[</span><span class='fl'>1</span>]]$<span class='no'>data</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
<span class='fu'><a href='plot.mkinfit.html'>plot_sep</a></span>(<span class='no'>f_river</span>)</div><img src='test_data_from_UBA_2014-4.png' alt='' width='540' height='400' /><div class='input'>
<span class='fu'>summary</span>(<span class='no'>f_river</span>)$<span class='no'>bpar</span></div><div class='output co'>#> Estimate se_notrans t value Pr(>t) Lower
#> parent_w_0 9.598567e+01 2.33959810 4.102657e+01 9.568973e-19 NA
#> k_parent_w_sink 3.603743e-01 0.03497716 1.030313e+01 4.988281e-09 NA
#> k_parent_w_parent_s 6.031370e-02 0.01746026 3.454342e+00 1.514738e-03 NA
#> k_parent_s_sink 5.099834e-11 0.10381939 4.912217e-10 5.000000e-01 NA
#> k_parent_s_parent_w 7.419672e-02 0.11338174 6.543974e-01 2.608057e-01 NA
#> Upper
#> parent_w_0 NA
#> k_parent_w_sink NA
#> k_parent_w_parent_s NA
#> k_parent_s_sink NA
#> k_parent_s_parent_w NA</div><div class='input'> <span class='fu'><a href='mkinerrmin.html'>mkinerrmin</a></span>(<span class='no'>f_river</span>)</div><div class='output co'>#> err.min n.optim df
#> All data 0.09246946 5 6
#> parent_w 0.06377096 3 3
#> parent_s 0.20882324 2 3</div><div class='input'>
<span class='co'># This is the evaluation used for the validation of software packages</span>
<span class='co'># in the expertise from 2014</span>
<span class='no'>m_soil</span> <span class='kw'><-</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='fu'>c</span>(<span class='st'>"M1"</span>, <span class='st'>"M2"</span>)),
<span class='kw'>M1</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='st'>"M3"</span>),
<span class='kw'>M2</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='st'>"M3"</span>),
<span class='kw'>M3</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>),
<span class='kw'>use_of_ff</span> <span class='kw'>=</span> <span class='st'>"max"</span>)</div><div class='output co'>#> <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'>
<span class='no'>f_soil</span> <span class='kw'><-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>m_soil</span>, <span class='no'>test_data_from_UBA_2014</span><span class='kw'>[[</span><span class='fl'>3</span>]]$<span class='no'>data</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
<span class='fu'><a href='plot.mkinfit.html'>plot_sep</a></span>(<span class='no'>f_soil</span>, <span class='kw'>lpos</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='st'>"topright"</span>, <span class='st'>"topright"</span>, <span class='st'>"topright"</span>, <span class='st'>"bottomright"</span>))</div><img src='test_data_from_UBA_2014-12.png' alt='' width='540' height='400' /><div class='input'> <span class='fu'>summary</span>(<span class='no'>f_soil</span>)$<span class='no'>bpar</span></div><div class='output co'>#> Estimate se_notrans t value Pr(>t) Lower
#> parent_0 76.55425583 0.943443834 81.1434164 4.422340e-30 74.602593306
#> k_parent 0.12081956 0.004815515 25.0896457 1.639665e-18 0.111257526
#> k_M1 0.84258650 0.930121206 0.9058889 1.871937e-01 0.085876305
#> k_M2 0.04210878 0.013729902 3.0669396 2.729137e-03 0.021450631
#> k_M3 0.01122919 0.008044866 1.3958205 8.804914e-02 0.002550985
#> f_parent_to_M1 0.32240199 0.278620411 1.1571370 1.295466e-01 NA
#> f_parent_to_M2 0.16099854 0.030548889 5.2701930 1.196191e-05 NA
#> f_M1_to_M3 0.27921500 0.314732717 0.8871496 1.920907e-01 0.015016888
#> f_M2_to_M3 0.55641332 0.650247079 0.8556952 2.004966e-01 0.005360551
#> Upper
#> parent_0 78.50591836
#> k_parent 0.13120340
#> k_M1 8.26714671
#> k_M2 0.08266187
#> k_M3 0.04942980
#> f_parent_to_M1 NA
#> f_parent_to_M2 NA
#> f_M1_to_M3 0.90777217
#> f_M2_to_M3 0.99658634</div><div class='input'> <span class='fu'><a href='mkinerrmin.html'>mkinerrmin</a></span>(<span class='no'>f_soil</span>)</div><div class='output co'>#> err.min n.optim df
#> All data 0.09649963 9 20
#> parent 0.04721283 2 6
#> M1 0.26551209 2 5
#> M2 0.20327575 2 5
#> M3 0.05196549 3 4</div><div class='input'>
</div></pre>
</div>
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<h2>Contents</h2>
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<li><a href="#format">Format</a></li>
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<li><a href="#examples">Examples</a></li>
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