path: root/log/test.log

ℹ Testing mkin
✔ | F W  S  OK | Context
✔ |          5 | AIC calculation
✔ |          5 | Analytical solutions for coupled models [1.5s]
✔ |          5 | Calculation of Akaike weights
✔ |          3 | Export dataset for reading into CAKE
✔ |          6 | Use of precompiled symbols in mkinpredict [3.3s]
✔ |         12 | Confidence intervals and p-values
✔ |      1  12 | Dimethenamid data from 2018 [13.1s]
✔ |         14 | Error model fitting [2.5s]
✔ |          5 | Time step normalisation
✔ |          4 | Calculation of FOCUS chi2 error levels
✔ |         14 | Results for FOCUS D established in expertise for UBA (Ranke 2014)
✔ |          4 | Test fitting the decline of metabolites from their maximum
✔ |          1 | Fitting the logistic model
✔ |         10 | Batch fitting and diagnosing hierarchical kinetic models [20.4s]
✔ |      2  16 | Nonlinear mixed-effects models [149.9s]
✔ |          3 | Test dataset classes mkinds and mkindsg
✔ |         10 | Special cases of mkinfit calls
✔ |          3 | mkinfit features
✔ |          8 | mkinmod model generation and printing
✔ |          3 | Model predictions with mkinpredict
✔ |         12 | Multistart method for saem.mmkin models [23.0s]
✔ |         16 | Evaluations according to 2015 NAFTA guidance [1.5s]
✔ |          9 | Nonlinear mixed-effects models with nlme [3.6s]
✔ |         15 | Plotting [4.8s]
✔ |          4 | Residuals extracted from mkinfit models
✔ |      1  38 | saemix parent models [35.2s]
✔ |          2 | Complex test case from Schaefer et al. (2007) Piacenza paper
✔ |         11 | Processing of residue series
✔ |         10 | Fitting the SFORB model [1.6s]
✔ |          1 | Summaries of old mkinfit objects
✔ |          5 | Summary
✔ |          4 | Results for synthetic data established in expertise for UBA (Ranke 2014)
✔ |          9 | Hypothesis tests [2.8s]
✔ |          4 | Calculation of maximum time weighted average concentrations (TWAs)

══ Results ═════════════════════════════════════════════════════════════════════
Duration: 268.2 s

── Skipped tests (4) ───────────────────────────────────────────────────────────
• Fitting this ODE model with saemix takes about 5 minutes on my new system
  (1): 'test_dmta.R:88:3'
• Fitting with saemix takes around 10 minutes when using deSolve (1):
  'test_mixed.R:80:3'
• This is seldom used, so save some time (1): 'test_mixed.R:133:3'
• This still takes almost 2.5 minutes although we do not solve ODEs (1):
  'test_saemix_parent.R:143:3'

[ FAIL 0 | WARN 0 | SKIP 4 | PASS 283 ]