path: root/log/test.log

ℹ Testing mkin
✔ | F W S  OK | Context
✔ |         5 | AIC calculation
✔ |         5 | Analytical solutions for coupled models [3.4s]
✔ |         5 | Calculation of Akaike weights
✔ |         3 | Export dataset for reading into CAKE
✔ |        12 | Confidence intervals and p-values [1.2s]
✔ |     1  12 | Dimethenamid data from 2018 [34.0s]
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Skip ('test_dmta.R:98'): Different backends get consistent results for SFO-SFO3+, dimethenamid data
Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
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✔ |        14 | Error model fitting [5.4s]
✔ |         5 | Time step normalisation
✔ |         4 | Calculation of FOCUS chi2 error levels [0.6s]
✔ |        14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.9s]
✔ |         4 | Test fitting the decline of metabolites from their maximum [0.4s]
✔ |         1 | Fitting the logistic model [0.3s]
✔ |        10 | Batch fitting and diagnosing hierarchical kinetic models [25.8s]
✔ |     1  13 | Nonlinear mixed-effects models [0.4s]
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Skip ('test_mixed.R:79'): saemix results are reproducible for biphasic fits
Reason: Fitting with saemix takes around 10 minutes when using deSolve
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✔ |         3 | Test dataset classes mkinds and mkindsg
✔ |        10 | Special cases of mkinfit calls [0.6s]
✔ |         3 | mkinfit features [0.7s]
✔ |         8 | mkinmod model generation and printing [0.2s]
✔ |         3 | Model predictions with mkinpredict [0.4s]
✔ |         9 | Multistart method for saem.mmkin models [38.2s]
✔ |        16 | Evaluations according to 2015 NAFTA guidance [2.4s]
✔ |         9 | Nonlinear mixed-effects models with nlme [9.2s]
✔ |        16 | Plotting [10.5s]
✔ |         4 | Residuals extracted from mkinfit models
✔ |     1  36 | saemix parent models [75.0s]
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Skip ('test_saemix_parent.R:143'): We can also use mkin solution methods for saem
Reason: This still takes almost 2.5 minutes although we do not solve ODEs
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✔ |         2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.6s]
✔ |        11 | Processing of residue series
✔ |        10 | Fitting the SFORB model [4.0s]
✔ |         1 | Summaries of old mkinfit objects
✔ |         5 | Summary [0.2s]
✔ |         4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.5s]
✔ |         9 | Hypothesis tests [9.0s]
✔ |         4 | Calculation of maximum time weighted average concentrations (TWAs) [2.3s]

══ Results ═════════════════════════════════════════════════════════════════════
Duration: 229.5 s

── Skipped tests  ──────────────────────────────────────────────────────────────
• Fitting this ODE model with saemix takes about 15 minutes on my system (1)
• Fitting with saemix takes around 10 minutes when using deSolve (1)
• This still takes almost 2.5 minutes although we do not solve ODEs (1)

[ FAIL 0 | WARN 0 | SKIP 3 | PASS 270 ]
Error while shutting down parallel: unable to terminate some child processes