path: root/log/test.log

ℹ Testing mkin
✔ | F W S  OK | Context
✔ |         5 | AIC calculation
✔ |         5 | Analytical solutions for coupled models [3.3s]
✔ |         5 | Calculation of Akaike weights
✔ |         3 | Export dataset for reading into CAKE
✔ |        12 | Confidence intervals and p-values [1.1s]
✔ |     1  12 | Dimethenamid data from 2018 [31.7s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data
Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
────────────────────────────────────────────────────────────────────────────────
✔ |        14 | Error model fitting [4.9s]
✔ |         5 | Time step normalisation
✔ |         4 | Calculation of FOCUS chi2 error levels [0.6s]
✔ |        14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s]
✔ |         4 | Test fitting the decline of metabolites from their maximum [0.4s]
✔ |         1 | Fitting the logistic model [0.2s]
✔ |         7 | Batch fitting and diagnosing hierarchical kinetic models [14.0s]
✔ |     1  12 | Nonlinear mixed-effects models [0.3s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_mixed.R:74:3): saemix results are reproducible for biphasic fits
Reason: Fitting with saemix takes around 10 minutes when using deSolve
────────────────────────────────────────────────────────────────────────────────
✔ |         3 | Test dataset classes mkinds and mkindsg
✔ |        10 | Special cases of mkinfit calls [0.4s]
✔ |         3 | mkinfit features [0.7s]
✔ |         8 | mkinmod model generation and printing [0.2s]
✔ |         3 | Model predictions with mkinpredict [0.3s]
✔ |   2     3 | Multistart method for saem.mmkin models [17.7s]
────────────────────────────────────────────────────────────────────────────────
Warning (test_multistart.R:15:3): multistart works for saem.mmkin models
Adding new file snapshot: 'tests/testhat/_snaps/llhist-for-biphasic-saemix-fit.svg'

Warning (test_multistart.R:16:3): multistart works for saem.mmkin models
Adding new file snapshot: 'tests/testhat/_snaps/parhist-for-biphasic-saemix-fit.svg'
────────────────────────────────────────────────────────────────────────────────
✔ |        16 | Evaluations according to 2015 NAFTA guidance [1.8s]
✔ |         9 | Nonlinear mixed-effects models with nlme [8.4s]
✔ |        16 | Plotting [10.1s]
✔ |         4 | Residuals extracted from mkinfit models
✔ |        36 | saemix parent models [309.8s]
✔ |         2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4s]
✔ |        11 | Processing of residue series
✔ |         7 | Fitting the SFORB model [3.6s]
✔ |         1 | Summaries of old mkinfit objects
✔ |         5 | Summary [0.2s]
✔ |         4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.1s]
✔ |         9 | Hypothesis tests [7.8s]
✔ |         4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s]

══ Results ═════════════════════════════════════════════════════════════════════
Duration: 424.4 s

── Skipped tests  ──────────────────────────────────────────────────────────────
• Fitting this ODE model with saemix takes about 15 minutes on my system (1)
• Fitting with saemix takes around 10 minutes when using deSolve (1)

[ FAIL 0 | WARN 2 | SKIP 2 | PASS 257 ]