path: root/test.log

ℹ Loading mkin
Loading required package: parallel
ℹ Testing mkin
✔ |  OK F W S | Context
✔ |   5       | AIC calculation
✔ |   5       | Analytical solutions for coupled models [3.5 s]
✔ |   5       | Calculation of Akaike weights
✔ |   2       | Export dataset for reading into CAKE
✔ |  12       | Confidence intervals and p-values [1.0 s]
✔ |  14       | Error model fitting [4.7 s]
✔ |   5       | Time step normalisation
✔ |   4       | Calculation of FOCUS chi2 error levels [0.6 s]
✔ |  14       | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8 s]
✔ |   4       | Test fitting the decline of metabolites from their maximum [0.3 s]
✔ |   1       | Fitting the logistic model [0.2 s]
✔ |  35     1 | Nonlinear mixed-effects models [26.9 s]
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Skip (test_mixed.R:161:3): saem results are reproducible for biphasic fits
Reason: Fitting with saemix takes around 10 minutes when using deSolve
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✔ |   2       | Test dataset classes mkinds and mkindsg
✔ |  10       | Special cases of mkinfit calls [0.4 s]
✔ |   1       | mkinfit features [0.3 s]
✔ |   8       | mkinmod model generation and printing [0.2 s]
✔ |   3       | Model predictions with mkinpredict [0.3 s]
✔ |  14     2 | Evaluations according to 2015 NAFTA guidance [1.3 s]
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Skip (test_nafta.R:25:5): Test data from Appendix B are correctly evaluated
Reason: getRversion() >= "4.1.0" is TRUE

Skip (test_nafta.R:53:5): Test data from Appendix D are correctly evaluated
Reason: getRversion() >= "4.1.0" is TRUE
────────────────────────────────────────────────────────────────────────────────
✔ |   9       | Nonlinear mixed-effects models with nlme [8.1 s]
✔ |   0     1 | Plotting [0.8 s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_plot.R:18:3): Plotting mkinfit, mmkin and mixed model objects is reproducible
Reason: getRversion() >= "4.1.0" is TRUE
────────────────────────────────────────────────────────────────────────────────
✔ |   4       | Residuals extracted from mkinfit models
✔ |   2       | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5 s]
✔ |   7       | Fitting the SFORB model [3.8 s]
✔ |   1       | Summaries of old mkinfit objects
✔ |   4       | Summary [0.1 s]
✔ |   4       | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.3 s]
✔ |   9       | Hypothesis tests [8.5 s]
✔ |   4       | Calculation of maximum time weighted average concentrations (TWAs) [2.2 s]

══ Results ═════════════════════════════════════════════════════════════════════
Duration: 68.2 s

── Skipped tests  ──────────────────────────────────────────────────────────────
• Fitting with saemix takes around 10 minutes when using deSolve (1)
• getRversion() >= "4.1.0" is TRUE (3)

[ FAIL 0 | WARN 0 | SKIP 4 | PASS 188 ]