context("Analytical solutions for coupled models")
# We do not want the warnings due to non-normality of residuals here
warn_option <- options(warn=-1)
test_that("The analytical solutions for SFO-SFO are correct", {
# No sink, no formation fractions
SFO_SFO_nosink <- mkinmod(
parent = mkinsub("SFO", to = "m1", sink = FALSE),
m1 = mkinsub("SFO"),
use_of_ff = "min", quiet = TRUE)
f_sfo_sfo_nosink <- mkinfit(SFO_SFO_nosink, FOCUS_D, quiet = TRUE)
f_sfo_sfo_nosink_deSolve <- mkinfit(SFO_SFO_nosink, FOCUS_D,
solution_type = "deSolve", quiet = TRUE)
expect_equal(
parms(f_sfo_sfo_nosink),
parms(f_sfo_sfo_nosink_deSolve)
)
# No sink, with formation fractions
SFO_SFO.ff_nosink <- mkinmod(
parent = mkinsub("SFO", to = "m1", sink = FALSE),
m1 = mkinsub("SFO"),
use_of_ff = "max", quiet = TRUE)
f_sfo_sfo_nosink <- mkinfit(SFO_SFO.ff_nosink, FOCUS_D, quiet = TRUE)
f_sfo_sfo_nosink_deSolve <- mkinfit(SFO_SFO.ff_nosink, FOCUS_D,
solution_type = "deSolve", quiet = TRUE)
expect_equal(
parms(f_sfo_sfo_nosink),
parms(f_sfo_sfo_nosink_deSolve)
)
# Without formation fraction
f_sfo_sfo_analytical <- mkinfit(SFO_SFO, FOCUS_D,
solution_type = "analytical", quiet = TRUE)
expect_equal(
parms(f_sfo_sfo_analytical),
parms(f_sfo_sfo_desolve)
)
# With formation fraction
f_sfo_sfo.ff_desolve <- mkinfit(SFO_SFO.ff, FOCUS_D,
solution_type = "deSolve", quiet = TRUE)
expect_equal(
parms(f_sfo_sfo.ff),
parms(f_sfo_sfo.ff_desolve),
tolerance = 5e-6
)
})
test_that("The analytical solution for DFOP-SFO are correct", {
# With formation fraction
f_dfop_sfo_analytical <- mkinfit(DFOP_SFO, FOCUS_D,
solution_type = "analytical", quiet = TRUE)
f_dfop_sfo_desolve <- mkinfit(DFOP_SFO, FOCUS_D,
solution_type = "deSolve", quiet = TRUE)
expect_equal(
parms(f_dfop_sfo_analytical),
parms(f_dfop_sfo_desolve),
tolerance = 5e-6
)
})
options(warn = warn_option$warn)
