path: root/tests/testthat/test_multistart.R

context("Multistart method for saem.mmkin models")

test_that("multistart works for saem.mmkin models", {
  set.seed(123456)
  saem_sfo_s_multi <- multistart(sfo_saem_1_reduced, n = 8, cores = n_cores,
    no_random_effect = "parent_0")
  anova_sfo <- anova(sfo_saem_1,
    sfo_saem_1_reduced,
    best(saem_sfo_s_multi),
    test = TRUE
  )
  expect_true(anova_sfo[3, "Pr(>Chisq)"] > 0.5)

  skip_on_cran() # Save CRAN time
  set.seed(123456)
  saem_biphasic_m_multi <- multistart(saem_biphasic_m, n = 8,
    cores = n_cores)
  expect_known_output(print(saem_biphasic_m_multi),
    file = "print_multistart_biphasic.txt")

  anova_biphasic <- anova(saem_biphasic_m,
    best(saem_biphasic_m_multi))

  expect_true(anova_biphasic[2, "AIC"] < anova_biphasic[1, "AIC"])
  skip_on_travis() # Plots are platform dependent

  llhist_sfo <- function() llhist(saem_sfo_s_multi)
  parhist_sfo <- function() parhist(saem_sfo_s_multi, ylim = c(0.5, 2))
  vdiffr::expect_doppelganger("llhist for sfo fit", llhist_sfo)
  vdiffr::expect_doppelganger("parhist for sfo fit", parhist_sfo)

  llhist_biphasic <- function() llhist(saem_biphasic_m_multi)
  parhist_biphasic <- function() parhist(saem_biphasic_m_multi,
    ylim = c(0.5, 2))

  vdiffr::expect_doppelganger("llhist for biphasic saemix fit", llhist_biphasic)
  vdiffr::expect_doppelganger("parhist for biphasic saemix fit", parhist_biphasic)
})