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| author | Johannes Ranke <johannes.ranke@jrwb.de> | 2024-07-28 09:25:18 +0200 |
|---|---|---|
| committer | Johannes Ranke <johannes.ranke@jrwb.de> | 2024-07-28 09:26:20 +0200 |
| commit | 272b3863d1463dfaf62c6e06ea22610c0540237f (patch) | |
| tree | ae1553dfd588a4e89940000170992be0434177e6 | |
| parent | 7dd7d6a56a0169242476a1969488ba21971c6290 (diff) | |
Make sure test work on my desktop, skip more tests on travis
| -rw-r--r-- | DESCRIPTION | 2 | ||||
| -rw-r--r-- | log/test.log | 16 | ||||
| -rw-r--r-- | tests/testthat/test_mixed.R | 2 |
3 files changed, 11 insertions, 9 deletions
diff --git a/DESCRIPTION b/DESCRIPTION index 6aa012b5..3c1c4f7d 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -36,4 +36,4 @@ VignetteBuilder: knitr BugReports: https://github.com/jranke/mkin/issues/ URL: https://pkgdown.jrwb.de/mkin/ Roxygen: list(markdown = TRUE) -RoxygenNote: 7.3.1 +RoxygenNote: 7.3.2 diff --git a/log/test.log b/log/test.log index e92a7409..0bd7338d 100644 --- a/log/test.log +++ b/log/test.log @@ -6,26 +6,26 @@ ✔ | 3 | Export dataset for reading into CAKE ✔ | 6 | Use of precompiled symbols in mkinpredict [3.1s] ✔ | 12 | Confidence intervals and p-values -✔ | 1 12 | Dimethenamid data from 2018 [13.0s] +✔ | 1 12 | Dimethenamid data from 2018 [13.3s] ✔ | 14 | Error model fitting [2.6s] ✔ | 5 | Time step normalisation ✔ | 4 | Calculation of FOCUS chi2 error levels ✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) ✔ | 4 | Test fitting the decline of metabolites from their maximum ✔ | 1 | Fitting the logistic model -✔ | 10 | Batch fitting and diagnosing hierarchical kinetic models [19.7s] -✔ | 2 16 | Nonlinear mixed-effects models [144.7s] +✔ | 10 | Batch fitting and diagnosing hierarchical kinetic models [19.1s] +✔ | 2 16 | Nonlinear mixed-effects models [148.9s] ✔ | 3 | Test dataset classes mkinds and mkindsg ✔ | 10 | Special cases of mkinfit calls ✔ | 3 | mkinfit features ✔ | 8 | mkinmod model generation and printing ✔ | 3 | Model predictions with mkinpredict -✔ | 12 | Multistart method for saem.mmkin models [23.3s] +✔ | 12 | Multistart method for saem.mmkin models [23.1s] ✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.5s] -✔ | 9 | Nonlinear mixed-effects models with nlme [3.7s] -✔ | 15 | Plotting [4.5s] +✔ | 9 | Nonlinear mixed-effects models with nlme [3.8s] +✔ | 15 | Plotting [4.6s] ✔ | 4 | Residuals extracted from mkinfit models -✔ | 1 38 | saemix parent models [34.8s] +✔ | 1 38 | saemix parent models [35.5s] ✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper ✔ | 11 | Processing of residue series ✔ | 10 | Fitting the SFORB model [1.7s] @@ -37,7 +37,7 @@ ✔ | 2 | water-sediment ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 262.3 s +Duration: 267.0 s ── Skipped tests (4) ─────────────────────────────────────────────────────────── • Fitting this ODE model with saemix takes about 5 minutes on my new system diff --git a/tests/testthat/test_mixed.R b/tests/testthat/test_mixed.R index d8ad4417..b9715096 100644 --- a/tests/testthat/test_mixed.R +++ b/tests/testthat/test_mixed.R @@ -89,6 +89,7 @@ test_that("saemix results are reproducible for biphasic fits", { test_that("Reading spreadsheets, finding ill-defined parameters and covariate modelling", { skip_on_cran() + skip_on_travis() data_path <- system.file( "testdata", "lambda-cyhalothrin_soil_efsa_2014.xlsx", @@ -115,6 +116,7 @@ test_that("Reading spreadsheets, finding ill-defined parameters and covariate mo test_that("SFO-SFO saemix specific analytical solution work", { skip_on_cran() + skip_on_travis() SFO_SFO <- mkinmod(DMTA = mkinsub("SFO", "M23"), M23 = mkinsub("SFO"), quiet = TRUE) |