Update test log with libopenblas0-pthread

1 files changed, 15 insertions, 49 deletions

diff --git a/log/test.log b/log/test.log
index 72234347..b36c62cd 100644
--- a/log/test.log
+++ b/log/test.log
@@ -1,12 +1,12 @@
 ℹ Testing mkin
 ✔ | F W S  OK | Context
 ✔ |         5 | AIC calculation
-✔ |         5 | Analytical solutions for coupled models [1.5s]
+✔ |         5 | Analytical solutions for coupled models [1.6s]
 ✔ |         5 | Calculation of Akaike weights
 ✔ |         3 | Export dataset for reading into CAKE
-✔ |         6 | Use of precompiled symbols in mkinpredict [3.1s]
+✔ |         6 | Use of precompiled symbols in mkinpredict [3.3s]
 ✔ |        12 | Confidence intervals and p-values [0.4s]
-✔ |     1  12 | Dimethenamid data from 2018 [12.9s]
+✔ |     1  12 | Dimethenamid data from 2018 [12.8s]
 ────────────────────────────────────────────────────────────────────────────────
 Skip ('test_dmta.R:88:3'): Different backends get consistent results for SFO-SFO3+, dimethenamid data
 Reason: Fitting this ODE model with saemix takes about 5 minutes on my new system
@@ -17,8 +17,8 @@ Reason: Fitting this ODE model with saemix takes about 5 minutes on my new syste
 ✔ |        14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.4s]
 ✔ |         4 | Test fitting the decline of metabolites from their maximum [0.2s]
 ✔ |         1 | Fitting the logistic model [0.1s]
-✔ |        10 | Batch fitting and diagnosing hierarchical kinetic models [19.0s]
-✔ |     2  16 | Nonlinear mixed-effects models [148.3s]
+✔ |        10 | Batch fitting and diagnosing hierarchical kinetic models [19.5s]
+✔ |     2  16 | Nonlinear mixed-effects models [148.1s]
 ────────────────────────────────────────────────────────────────────────────────
 Skip ('test_mixed.R:80:3'): saemix results are reproducible for biphasic fits
 Reason: Fitting with saemix takes around 10 minutes when using deSolve
@@ -29,55 +29,21 @@ Reason: This is seldom used, so save some time
 ✔ |         3 | Test dataset classes mkinds and mkindsg
 ✔ |        10 | Special cases of mkinfit calls [0.3s]
 ✔ |         3 | mkinfit features [0.5s]
-✔ |         8 | mkinmod model generation and printing
-✔ |         3 | Model predictions with mkinpredict [0.1s]
-✖ | 3       9 | Multistart method for saem.mmkin models [22.9s]
-────────────────────────────────────────────────────────────────────────────────
-Failure ('test_multistart.R:44:3'): multistart works for saem.mmkin models
-Snapshot of `testcase` to 'multistart/mixed-model-fit-for-saem-object-with-mkin-transformations.svg' has changed
-Run `testthat::snapshot_review('multistart/')` to review changes
-Backtrace:
- 1. vdiffr::expect_doppelganger(...)
-      at test_multistart.R:44:2
- 3. testthat::expect_snapshot_file(...)
-
-Failure ('test_multistart.R:55:3'): multistart works for saem.mmkin models
-Snapshot of `testcase` to 'multistart/llhist-for-dfop-sfo-fit.svg' has changed
-Run `testthat::snapshot_review('multistart/')` to review changes
-Backtrace:
- 1. vdiffr::expect_doppelganger("llhist for dfop sfo fit", llhist_dfop_sfo)
-      at test_multistart.R:55:2
- 3. testthat::expect_snapshot_file(...)
-
-Failure ('test_multistart.R:56:3'): multistart works for saem.mmkin models
-Snapshot of `testcase` to 'multistart/parplot-for-dfop-sfo-fit.svg' has changed
-Run `testthat::snapshot_review('multistart/')` to review changes
-Backtrace:
- 1. vdiffr::expect_doppelganger("parplot for dfop sfo fit", parplot_dfop_sfo)
-      at test_multistart.R:56:2
- 3. testthat::expect_snapshot_file(...)
-────────────────────────────────────────────────────────────────────────────────
-✔ |        16 | Evaluations according to 2015 NAFTA guidance [1.5s]
-✔ |         9 | Nonlinear mixed-effects models with nlme [3.7s]
-✖ | 1      14 | Plotting [4.6s]
-────────────────────────────────────────────────────────────────────────────────
-Failure ('test_plot.R:55:3'): Plotting mkinfit, mmkin and mixed model objects is reproducible
-Snapshot of `testcase` to 'plot/mixed-model-fit-for-nlme-object.svg' has changed
-Run `testthat::snapshot_review('plot/')` to review changes
-Backtrace:
- 1. vdiffr::expect_doppelganger(...)
-      at test_plot.R:55:2
- 3. testthat::expect_snapshot_file(...)
-────────────────────────────────────────────────────────────────────────────────
+✔ |         8 | mkinmod model generation and printing [0.1s]
+✔ |         3 | Model predictions with mkinpredict [0.2s]
+✔ |        12 | Multistart method for saem.mmkin models [28.4s]
+✔ |        16 | Evaluations according to 2015 NAFTA guidance [1.6s]
+✔ |         9 | Nonlinear mixed-effects models with nlme [3.8s]
+✔ |        15 | Plotting [4.6s]
 ✔ |         4 | Residuals extracted from mkinfit models
-✔ |     1  36 | saemix parent models [31.2s]
+✔ |     1  36 | saemix parent models [31.0s]
 ────────────────────────────────────────────────────────────────────────────────
 Skip ('test_saemix_parent.R:143:3'): We can also use mkin solution methods for saem
 Reason: This still takes almost 2.5 minutes although we do not solve ODEs
 ────────────────────────────────────────────────────────────────────────────────
 ✔ |         2 | Complex test case from Schaefer et al. (2007) Piacenza paper [0.5s]
 ✔ |        11 | Processing of residue series
-✔ |        10 | Fitting the SFORB model [1.7s]
+✔ |        10 | Fitting the SFORB model [1.8s]
 ✔ |         1 | Summaries of old mkinfit objects
 ✔ |         5 | Summary
 ✔ |         4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [0.8s]
@@ -85,7 +51,7 @@ Reason: This still takes almost 2.5 minutes although we do not solve ODEs
 ✔ |         4 | Calculation of maximum time weighted average concentrations (TWAs) [0.7s]
 
 ══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 260.5 s
+Duration: 266.7 s
 
 ── Skipped tests  ──────────────────────────────────────────────────────────────
 • Fitting this ODE model with saemix takes about 5 minutes on my new system (1)
@@ -93,4 +59,4 @@ Duration: 260.5 s
 • This is seldom used, so save some time (1)
 • This still takes almost 2.5 minutes although we do not solve ODEs (1)
 
-[ FAIL 4 | WARN 0 | SKIP 4 | PASS 277 ]
+[ FAIL 0 | WARN 0 | SKIP 4 | PASS 281 ]