diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2022-11-18 06:50:00 +0100 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2022-11-18 06:50:00 +0100 |
| commit | 1ba099d12ece70f77737505c41eaa7fd1c701140 (patch) | |
| tree | 35365d984494ebd3bd0315a0175d18f99d9d37c2 | |
| parent | 9db8338d3a9240ed4685fcdd7aab9692031d5a04 (diff) | |
Avoid ill-determined fit, it is platform dependent
The previous test lead to an error on the Fedora test systems (gcc and
clang) on CRAN:
...
Results have changed from known value recorded in 'print_dfop_saemix_1.txt'.
old[13:24] vs new[13:24]
""
"Fitted parameters:"
" estimate lower upper"
- "parent_0 100.09 98.94 101.25"
+ "parent_0 100.17 99.01 101.33"
- "log_k1 -2.68 -2.91 -2.45"
+ "log_k1 -2.66 -2.89 -2.43"
"log_k2 -4.12 -4.24 -4.00"
- "g_qlogis -0.41 -0.63 -0.20"
+ "g_qlogis -0.43 -0.65 -0.21"
- "a.1 0.91 0.67 1.15"
+ "a.1 0.91 0.67 1.16"
"b.1 0.05 0.04 0.06"
- "SD.log_k1 0.36 0.21 0.50"
+ "SD.log_k1 0.35 0.21 0.50"
and 2 more ...
| -rw-r--r-- | tests/testthat/print_dfop_saemix_1.txt | 21 | ||||
| -rw-r--r-- | tests/testthat/setup_script.R | 2 |
2 files changed, 11 insertions, 12 deletions
diff --git a/tests/testthat/print_dfop_saemix_1.txt b/tests/testthat/print_dfop_saemix_1.txt index f6fda37c..bdc40065 100644 --- a/tests/testthat/print_dfop_saemix_1.txt +++ b/tests/testthat/print_dfop_saemix_1.txt @@ -9,16 +9,15 @@ Data: Likelihood computed by importance sampling AIC BIC logLik - 1409 1415 -695 + 1409 1415 -696 Fitted parameters: - estimate lower upper -parent_0 100.09 98.94 101.25 -log_k1 -2.68 -2.91 -2.45 -log_k2 -4.12 -4.24 -4.00 -g_qlogis -0.41 -0.63 -0.20 -a.1 0.91 0.67 1.15 -b.1 0.05 0.04 0.06 -SD.log_k1 0.36 0.21 0.50 -SD.log_k2 0.22 0.13 0.30 -SD.g_qlogis 0.15 -0.09 0.40 + estimate lower upper +parent_0 99.92 98.77 101.06 +log_k1 -2.72 -2.95 -2.50 +log_k2 -4.14 -4.27 -4.01 +g_qlogis -0.35 -0.53 -0.16 +a.1 0.92 0.68 1.16 +b.1 0.05 0.04 0.06 +SD.log_k1 0.37 0.23 0.51 +SD.log_k2 0.23 0.14 0.31 diff --git a/tests/testthat/setup_script.R b/tests/testthat/setup_script.R index 777c998a..362038c3 100644 --- a/tests/testthat/setup_script.R +++ b/tests/testthat/setup_script.R @@ -185,7 +185,7 @@ nlme_biphasic <- suppressWarnings(nlme(mmkin_biphasic)) sfo_saem_1 <- saem(mmkin_sfo_1, quiet = TRUE, transformations = "saemix") sfo_saem_1_reduced <- update(sfo_saem_1, no_random_effect = "parent_0") dfop_saemix_1 <- saem(mmkin_dfop_1, quiet = TRUE, transformations = "mkin", - no_random_effect = "parent_0") + no_random_effect = c("parent_0", "g_qlogis")) saem_biphasic_m <- saem(mmkin_biphasic, transformations = "mkin", quiet = TRUE) saem_biphasic_s <- saem(mmkin_biphasic, transformations = "saemix", quiet = TRUE) |