diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2020-06-15 10:27:19 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2020-06-15 10:27:19 +0200 |
| commit | 8363b1c179c4e83d97c3c0c4cfa365f92c7832af (patch) | |
| tree | e745ed501c421345483574e940ef67d3c9656dd6 | |
| parent | 8100cd494b0e1869fc03af6c664a5a2cdbb36002 (diff) | |
Test plots on r-devel only
following the arguments of Xavier Robin https://github.com/r-lib/vdiffr/issues/86#issuecomment-636447231
21 files changed, 252 insertions, 237 deletions
diff --git a/GNUmakefile b/GNUmakefile index d2476218..8108704a 100644 --- a/GNUmakefile +++ b/GNUmakefile @@ -10,6 +10,7 @@ WINBIN := $(PKGSRC)_$(PKGVERS).zip # If no alternate bin folder is specified, the default is to use the folder # containing the first instance of R on the PATH. RBIN ?= $(shell dirname "`which R`") +#RBIN=/home/jranke/svn/R/r-devel/build/bin # Specify package and static documentation directories for subversion on r-forge RFSVN ?= $(HOME)/svn/r-forge/kinfit @@ -82,7 +83,7 @@ slowtests: install sed -i -e "s/\r.*\r//" tests_slow.log vdiffr: - "$(RBIN)/Rscript" -e 'vdiffr::manage_cases(filter = "plots|nafta")' + /home/jranke/svn/R/r-devel/build/bin/Rscript -e 'vdiffr::manage_cases(filter = "plot|nafta")' testcheck: test check @@ -5,32 +5,43 @@ Testing mkin ✔ | 2 | Export dataset for reading into CAKE ✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.9 s] ✔ | 4 | Calculation of FOCUS chi2 error levels [0.4 s] -✔ | 7 | Fitting the SFORB model [3.5 s] -✔ | 5 | Analytical solutions for coupled models [3.3 s] +✔ | 7 | Fitting the SFORB model [3.3 s] +✔ | 5 | Analytical solutions for coupled models [3.2 s] ✔ | 5 | Calculation of Akaike weights -✔ | 10 | Confidence intervals and p-values [1.2 s] -✔ | 14 | Error model fitting [4.0 s] +✔ | 10 | Confidence intervals and p-values [1.1 s] +✔ | 14 | Error model fitting [3.8 s] ✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3 s] ✔ | 1 | Fitting the logistic model [0.2 s] ✔ | 1 | Test dataset class mkinds used in gmkin ✔ | 12 | Special cases of mkinfit calls [0.6 s] -✔ | 8 | mkinmod model generation and printing [0.3 s] +✔ | 8 | mkinmod model generation and printing [0.2 s] ✔ | 3 | Model predictions with mkinpredict [0.4 s] -✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.5 s] -✔ | 9 | Nonlinear mixed-effects models [8.0 s] -✔ | 14 | Plotting [1.5 s] +✔ | 14 2 | Evaluations according to 2015 NAFTA guidance [1.1 s] +──────────────────────────────────────────────────────────────────────────────── +test_nafta.R:25: skip: Test data from Appendix B are correctly evaluated +Reason: getRversion() < "4.1.0" is TRUE + +test_nafta.R:53: skip: Test data from Appendix D are correctly evaluated +Reason: getRversion() < "4.1.0" is TRUE +──────────────────────────────────────────────────────────────────────────────── +✔ | 9 | Nonlinear mixed-effects models [7.8 s] +✔ | 0 1 | Plotting [0.7 s] +──────────────────────────────────────────────────────────────────────────────── +test_plot.R:24: skip: Plotting mkinfit and mmkin objects is reproducible +Reason: getRversion() < "4.1.0" is TRUE +──────────────────────────────────────────────────────────────────────────────── ✔ | 4 | Residuals extracted from mkinfit models ✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5 s] ✔ | 4 | Summary [0.1 s] ✔ | 1 | Summaries of old mkinfit objects -✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.3 s] -✔ | 9 | Hypothesis tests [7.0 s] -✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.4 s] +✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2 s] +✔ | 9 | Hypothesis tests [6.8 s] +✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.5 s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 39.7 s +Duration: 37.2 s -OK: 161 +OK: 145 Failed: 0 Warnings: 0 -Skipped: 0 +Skipped: 3 diff --git a/tests/figs/deps.txt b/tests/figs/deps.txt index 0f64e23e..fa7c5968 100644 --- a/tests/figs/deps.txt +++ b/tests/figs/deps.txt @@ -1,3 +1,3 @@ - vdiffr-svg-engine: 1.0 -- vdiffr: 0.3.1 +- vdiffr: 0.3.2 - freetypeharfbuzz: 0.2.5 diff --git a/tests/figs/evaluations-according-to-2015-nafta-guidance/nafta-sop-appendix-b.svg b/tests/figs/evaluations-according-to-2015-nafta-guidance/nafta-sop-appendix-b.svg index 617e39b3..b3aaee5a 100644 --- a/tests/figs/evaluations-according-to-2015-nafta-guidance/nafta-sop-appendix-b.svg +++ b/tests/figs/evaluations-according-to-2015-nafta-guidance/nafta-sop-appendix-b.svg @@ -40,7 +40,7 @@ <text transform='translate(29.23,100.99) rotate(-90)' style='font-size: 8.40px; 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