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authorJohannes Ranke <jranke@uni-bremen.de>2022-10-28 11:16:54 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2022-10-28 11:16:54 +0200
commit782bb645325efa8d1d1f971370478fd369b0a107 (patch)
tree7795342f74f6b114cc358f8570c860413f7c76a4
parent4c868d65be04c8ee3fedc89d28d0e7d8c5da05e0 (diff)
Update test to renamed method
-rw-r--r--log/test.log26
-rw-r--r--tests/testthat/summary_parent_FOCUS_2006.txt2
2 files changed, 14 insertions, 14 deletions
diff --git a/log/test.log b/log/test.log
index 6f6d0f23..dee62073 100644
--- a/log/test.log
+++ b/log/test.log
@@ -1,22 +1,22 @@
ℹ Testing mkin
✔ | F W S OK | Context
✔ | 5 | AIC calculation
-✔ | 5 | Analytical solutions for coupled models [3.2s]
+✔ | 5 | Analytical solutions for coupled models [3.4s]
✔ | 5 | Calculation of Akaike weights
✔ | 3 | Export dataset for reading into CAKE
✔ | 12 | Confidence intervals and p-values [1.0s]
-✔ | 1 12 | Dimethenamid data from 2018 [31.8s]
+✔ | 1 12 | Dimethenamid data from 2018 [32.5s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data
Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
────────────────────────────────────────────────────────────────────────────────
-✔ | 14 | Error model fitting [4.9s]
+✔ | 14 | Error model fitting [5.0s]
✔ | 5 | Time step normalisation
✔ | 4 | Calculation of FOCUS chi2 error levels [0.6s]
✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s]
-✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3s]
+✔ | 4 | Test fitting the decline of metabolites from their maximum [0.4s]
✔ | 1 | Fitting the logistic model [0.2s]
-✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.6s]
+✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.5s]
✔ | 1 12 | Nonlinear mixed-effects models [0.3s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_mixed.R:74:3): saemix results are reproducible for biphasic fits
@@ -26,13 +26,13 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve
✔ | 10 | Special cases of mkinfit calls [0.4s]
✔ | 3 | mkinfit features [0.7s]
✔ | 8 | mkinmod model generation and printing [0.2s]
-✔ | 3 | Model predictions with mkinpredict [0.4s]
-✔ | 7 | Multistart method for saem.mmkin models [36.0s]
+✔ | 3 | Model predictions with mkinpredict [0.3s]
+✔ | 7 | Multistart method for saem.mmkin models [37.6s]
✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.3s]
-✔ | 9 | Nonlinear mixed-effects models with nlme [8.6s]
-✔ | 16 | Plotting [10.0s]
+✔ | 9 | Nonlinear mixed-effects models with nlme [8.7s]
+✔ | 16 | Plotting [10.1s]
✔ | 4 | Residuals extracted from mkinfit models
-✔ | 1 36 | saemix parent models [71.5s]
+✔ | 1 36 | saemix parent models [72.8s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_saemix_parent.R:152:3): We can also use mkin solution methods for saem
Reason: This still takes almost 2.5 minutes although we do not solve ODEs
@@ -43,11 +43,11 @@ Reason: This still takes almost 2.5 minutes although we do not solve ODEs
✔ | 1 | Summaries of old mkinfit objects
✔ | 5 | Summary [0.2s]
✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2s]
-✔ | 9 | Hypothesis tests [8.1s]
-✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s]
+✔ | 9 | Hypothesis tests [8.3s]
+✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.1s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 206.0 s
+Duration: 210.4 s
── Skipped tests ──────────────────────────────────────────────────────────────
• Fitting this ODE model with saemix takes about 15 minutes on my system (1)
diff --git a/tests/testthat/summary_parent_FOCUS_2006.txt b/tests/testthat/summary_parent_FOCUS_2006.txt
index 60a36b67..418476c0 100644
--- a/tests/testthat/summary_parent_FOCUS_2006.txt
+++ b/tests/testthat/summary_parent_FOCUS_2006.txt
@@ -1,7 +1,7 @@
Error model: Constant variance
Fitted in test time 0 s
-Convergence:
+Status:
dataset
model FOCUS_C FOCUS_D
SFO OK OK

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