Vignettes as just synced to the static documentation on r-forge

3 files changed, 21 insertions, 27 deletions

diff --git a/vignettes/FOCUS_L.html b/vignettes/FOCUS_L.html
index b44481e9..bb02ec3e 100644
--- a/vignettes/FOCUS_L.html
+++ b/vignettes/FOCUS_L.html
@@ -193,13 +193,7 @@ hr {
 report, p. 284</p>
 
 <pre><code class="r">library(&quot;mkin&quot;)
-</code></pre>
-
-<pre><code>## Loading required package: minpack.lm
-## Loading required package: rootSolve
-</code></pre>
-
-<pre><code class="r">FOCUS_2006_L1 = data.frame(
+FOCUS_2006_L1 = data.frame(
   t = rep(c(0, 1, 2, 3, 5, 7, 14, 21, 30), each = 2),
   parent = c(88.3, 91.4, 85.6, 84.5, 78.9, 77.6, 
              72.0, 71.9, 50.3, 59.4, 47.0, 45.1,
@@ -231,8 +225,8 @@ summary(m.L1.SFO)
 
 <pre><code>## mkin version:    0.9.31 
 ## R version:       3.1.1 
-## Date of fit:     Mon Jul 14 12:36:12 2014 
-## Date of summary: Mon Jul 14 12:36:12 2014 
+## Date of fit:     Mon Jul 14 20:32:20 2014 
+## Date of summary: Mon Jul 14 20:32:20 2014 
 ## 
 ## Equations:
 ## [1] d_parent = - k_parent_sink * parent
@@ -333,8 +327,8 @@ summary(m.L1.FOMC, data = FALSE)
 
 <pre><code>## mkin version:    0.9.31 
 ## R version:       3.1.1 
-## Date of fit:     Mon Jul 14 12:36:12 2014 
-## Date of summary: Mon Jul 14 12:36:12 2014 
+## Date of fit:     Mon Jul 14 20:32:20 2014 
+## Date of summary: Mon Jul 14 20:32:20 2014 
 ## 
 ## Equations:
 ## [1] d_parent = - (alpha/beta) * ((time/beta) + 1)^-1 * parent
@@ -425,8 +419,8 @@ summary(m.L2.SFO)
 
 <pre><code>## mkin version:    0.9.31 
 ## R version:       3.1.1 
-## Date of fit:     Mon Jul 14 12:36:12 2014 
-## Date of summary: Mon Jul 14 12:36:13 2014 
+## Date of fit:     Mon Jul 14 20:32:20 2014 
+## Date of summary: Mon Jul 14 20:32:20 2014 
 ## 
 ## Equations:
 ## [1] d_parent = - k_parent_sink * parent
@@ -534,8 +528,8 @@ mkinresplot(m.L2.FOMC)
 
 <pre><code>## mkin version:    0.9.31 
 ## R version:       3.1.1 
-## Date of fit:     Mon Jul 14 12:36:13 2014 
-## Date of summary: Mon Jul 14 12:36:13 2014 
+## Date of fit:     Mon Jul 14 20:32:21 2014 
+## Date of summary: Mon Jul 14 20:32:21 2014 
 ## 
 ## Equations:
 ## [1] d_parent = - (alpha/beta) * ((time/beta) + 1)^-1 * parent
@@ -619,8 +613,8 @@ plot(m.L2.DFOP)
 
 <pre><code>## mkin version:    0.9.31 
 ## R version:       3.1.1 
-## Date of fit:     Mon Jul 14 12:36:13 2014 
-## Date of summary: Mon Jul 14 12:36:13 2014 
+## Date of fit:     Mon Jul 14 20:32:23 2014 
+## Date of summary: Mon Jul 14 20:32:23 2014 
 ## 
 ## Equations:
 ## [1] d_parent = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * time))) * parent
@@ -705,8 +699,8 @@ plot(m.L3.SFO)
 
 <pre><code>## mkin version:    0.9.31 
 ## R version:       3.1.1 
-## Date of fit:     Mon Jul 14 12:36:14 2014 
-## Date of summary: Mon Jul 14 12:36:14 2014 
+## Date of fit:     Mon Jul 14 20:32:23 2014 
+## Date of summary: Mon Jul 14 20:32:23 2014 
 ## 
 ## Equations:
 ## [1] d_parent = - k_parent_sink * parent
@@ -790,8 +784,8 @@ plot(m.L3.FOMC)
 
 <pre><code>## mkin version:    0.9.31 
 ## R version:       3.1.1 
-## Date of fit:     Mon Jul 14 12:36:14 2014 
-## Date of summary: Mon Jul 14 12:36:14 2014 
+## Date of fit:     Mon Jul 14 20:32:24 2014 
+## Date of summary: Mon Jul 14 20:32:24 2014 
 ## 
 ## Equations:
 ## [1] d_parent = - (alpha/beta) * ((time/beta) + 1)^-1 * parent
@@ -862,8 +856,8 @@ plot(m.L3.DFOP)
 
 <pre><code>## mkin version:    0.9.31 
 ## R version:       3.1.1 
-## Date of fit:     Mon Jul 14 12:36:14 2014 
-## Date of summary: Mon Jul 14 12:36:14 2014 
+## Date of fit:     Mon Jul 14 20:32:24 2014 
+## Date of summary: Mon Jul 14 20:32:24 2014 
 ## 
 ## Equations:
 ## [1] d_parent = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * time))) * parent
@@ -952,8 +946,8 @@ plot(m.L4.SFO)
 
 <pre><code>## mkin version:    0.9.31 
 ## R version:       3.1.1 
-## Date of fit:     Mon Jul 14 12:36:15 2014 
-## Date of summary: Mon Jul 14 12:36:15 2014 
+## Date of fit:     Mon Jul 14 20:32:27 2014 
+## Date of summary: Mon Jul 14 20:32:27 2014 
 ## 
 ## Equations:
 ## [1] d_parent = - k_parent_sink * parent
@@ -1026,8 +1020,8 @@ plot(m.L4.FOMC)
 
 <pre><code>## mkin version:    0.9.31 
 ## R version:       3.1.1 
-## Date of fit:     Mon Jul 14 12:36:15 2014 
-## Date of summary: Mon Jul 14 12:36:15 2014 
+## Date of fit:     Mon Jul 14 20:32:28 2014 
+## Date of summary: Mon Jul 14 20:32:28 2014 
 ## 
 ## Equations:
 ## [1] d_parent = - (alpha/beta) * ((time/beta) + 1)^-1 * parent
diff --git a/vignettes/FOCUS_Z.pdf b/vignettes/FOCUS_Z.pdf
index 38490f09..559504cc 100644
--- a/vignettes/FOCUS_Z.pdf
+++ b/vignettes/FOCUS_Z.pdf
diff --git a/vignettes/mkin.pdf b/vignettes/mkin.pdf
index f41a9d6a..f06d38f9 100644
--- a/vignettes/mkin.pdf
+++ b/vignettes/mkin.pdf