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authorJohannes Ranke <jranke@uni-bremen.de>2020-05-12 11:06:48 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2020-05-12 11:39:20 +0200
commita7b8ec200358b6a331e76b3517c7ad21cc30346e (patch)
tree3f3d6585468fb413769ba568943cfe3582216fe2
parent01284e456dc6df8e064a7a42f194fcd81d9ce7a1 (diff)
Rerun tests and checks, CRAN comments
-rw-r--r--check.log2
-rw-r--r--cran-comments.md5
-rw-r--r--docs/pkgdown.yml2
-rw-r--r--dumpdata.R7
-rw-r--r--test.log10
-rw-r--r--tests/testthat/FOCUS_2006_D.csf2
6 files changed, 13 insertions, 15 deletions
diff --git a/check.log b/check.log
index 99cb6f86..17413d04 100644
--- a/check.log
+++ b/check.log
@@ -5,7 +5,7 @@
* using options ‘--no-tests --as-cran’
* checking for file ‘mkin/DESCRIPTION’ ... OK
* checking extension type ... Package
-* this is package ‘mkin’ version ‘0.9.50.1’
+* this is package ‘mkin’ version ‘0.9.50.2’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... Note_to_CRAN_maintainers
Maintainer: ‘Johannes Ranke <jranke@uni-bremen.de>’
diff --git a/cran-comments.md b/cran-comments.md
new file mode 100644
index 00000000..e630e0a8
--- /dev/null
+++ b/cran-comments.md
@@ -0,0 +1,5 @@
+Update of yesterdays release, addressing a platform specific test outcome on Solaris that
+was revealed by the CRAN checks.
+
+This update also fixes a number of spelling errors that were found with the help of
+devtools::spell_check().
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
index 0dfcf9e1..15b8ca37 100644
--- a/docs/pkgdown.yml
+++ b/docs/pkgdown.yml
@@ -10,7 +10,7 @@ articles:
NAFTA_examples: web_only/NAFTA_examples.html
benchmarks: web_only/benchmarks.html
compiled_models: web_only/compiled_models.html
-last_built: 2020-05-12T08:55Z
+last_built: 2020-05-12T09:06Z
urls:
reference: https://pkgdown.jrwb.de/mkin/reference
article: https://pkgdown.jrwb.de/mkin/articles
diff --git a/dumpdata.R b/dumpdata.R
deleted file mode 100644
index 881df526..00000000
--- a/dumpdata.R
+++ /dev/null
@@ -1,7 +0,0 @@
-mkinpredict <-
-function (x, odeparms, odeini, outtimes = seq(0, 120, by = 0.10000000000000001),
- solution_type = "deSolve", use_compiled = "auto", method.ode = "lsoda",
- atol = 1e-08, rtol = 1e-10, map_output = TRUE, ...)
-{
- UseMethod("mkinpredict", x)
-}
diff --git a/test.log b/test.log
index 94603b7f..ffd374e4 100644
--- a/test.log
+++ b/test.log
@@ -8,14 +8,14 @@ Testing mkin
✔ | 5 | Analytical solutions for coupled models [3.0 s]
✔ | 5 | Calculation of Akaike weights
✔ | 10 | Confidence intervals and p-values [1.0 s]
-✔ | 14 | Error model fitting [3.9 s]
+✔ | 14 | Error model fitting [3.7 s]
✔ | 4 | Test fitting the decline of metabolites from their maximum [0.2 s]
✔ | 1 | Fitting the logistic model [0.2 s]
✔ | 1 | Test dataset class mkinds used in gmkin
✔ | 12 | Special cases of mkinfit calls [0.6 s]
✔ | 8 | mkinmod model generation and printing [0.2 s]
-✔ | 3 | Model predictions with mkinpredict [0.4 s]
-✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.4 s]
+✔ | 3 | Model predictions with mkinpredict [0.3 s]
+✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.3 s]
✔ | 9 | Nonlinear mixed-effects models [7.5 s]
✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.4 s]
✔ | 3 | Summary
@@ -25,10 +25,10 @@ Testing mkin
✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4 s]
✔ | 1 | Summaries of old mkinfit objects
✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.3 s]
-✔ | 9 | Hypothesis tests [6.5 s]
+✔ | 9 | Hypothesis tests [6.6 s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 37.3 s
+Duration: 37.2 s
OK: 159
Failed: 0
diff --git a/tests/testthat/FOCUS_2006_D.csf b/tests/testthat/FOCUS_2006_D.csf
index c0c5c10c..6b23d445 100644
--- a/tests/testthat/FOCUS_2006_D.csf
+++ b/tests/testthat/FOCUS_2006_D.csf
@@ -5,7 +5,7 @@ Description:
MeasurementUnits: % AR
TimeUnits: days
Comments: Created using mkin::CAKE_export
-Date: 2020-05-11
+Date: 2020-05-12
Optimiser: IRLS
[Data]

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