diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2014-06-26 08:11:49 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2014-06-26 08:11:49 +0200 |
| commit | 6fd8b2a1ef16265f12d54bb182393bdeaada2db4 (patch) | |
| tree | 5c9e5babbecb95fc0ce96004275f9902b4b8522b | |
| parent | 606883b6dfa9ffdf11c280cfabe7580c67e73e58 (diff) | |
Start new version, add xlim to mkinresplot
| -rw-r--r-- | ChangeLog | 16 | ||||
| -rw-r--r-- | DESCRIPTION | 4 | ||||
| -rw-r--r-- | R/mkinresplot.R | 5 | ||||
| -rw-r--r-- | man/mkinresplot.Rd | 4 |
4 files changed, 19 insertions, 10 deletions
@@ -1,8 +1,12 @@ +2014-06-26 Johannes Ranke <jranke@uni-bremen.de> for mkin (0.9-29)
+
+ * R/mkinresplot.R: Make it possible to specify xlim
+
2014-05-20 Johannes Ranke <jranke@uni-bremen.de> for mkin (0.9-28)
* Do not backtransform confidence intervals for formation fractions if more
- than one compound is formed, as such parameters only define the pathways
- as a set
+ than one compound is formed, as such parameters only define the
+ pathways as a set
* Add historical remarks and some background to the main package vignette
* Correct 'isotropic' into 'isometric' for the ilr transformation
@@ -25,10 +29,10 @@ * Split examples vignette to FOCUS_L and FOCUS_Z
* Remove warning about constant formation fractions in mkinmod
as it was based on a misconception
- * Restrict the unit test with the Schaefer data to parent and primary
- metabolites as formation fraction and DT50 for A2 are higly correlated and
- passing the test is platform dependent. For example, the test fails in 1
- out of 14 platforms on CRAN as of today.
+ * Restrict the unit test with the Schaefer data to parent and primary
+ metabolites as formation fraction and DT50 for A2 are higly
+ correlated and passing the test is platform dependent. For example,
+ the test fails in 1 out of 14 platforms on CRAN as of today.
* Add Eurofins Regulatory AG copyright notices
* Import FME and deSolve instead of depending on them to have clean startup
* Add a starter function for the GUI: gmkin()
diff --git a/DESCRIPTION b/DESCRIPTION index 702d3604..1c2422f6 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -2,8 +2,8 @@ Package: mkin Type: Package Title: Routines for fitting kinetic models with one or more state variables to chemical degradation data -Version: 0.9-28 -Date: 2014-05-20 +Version: 0.9-29 +Date: 2014-06-26 Authors@R: c(person("Johannes", "Ranke", role = c("aut", "cre", "cph"), email = "jranke@uni-bremen.de"), person("Katrin", "Lindenberger", role = "ctb"), diff --git a/R/mkinresplot.R b/R/mkinresplot.R index 07bd7dfa..c9a801fd 100644 --- a/R/mkinresplot.R +++ b/R/mkinresplot.R @@ -19,8 +19,9 @@ if(getRversion() >= '2.15.1') utils::globalVariables(c("variable", "residual")) mkinresplot <- function (object,
obs_vars = names(object$mkinmod$map),
+ xlim = c(0, 1.1 * max(object$data$time)),
xlab = "Time", ylab = "Residual",
- maxabs = "auto", legend= TRUE, lpos = "topright", ...)
+ maxabs = "auto", legend= TRUE, lpos = "topright", ...)
{
obs_vars_all <- as.character(unique(object$data$variable))
@@ -36,7 +37,7 @@ mkinresplot <- function (object, names(col_obs) <- names(pch_obs) <- obs_vars
plot(0, xlab = xlab, ylab = ylab,
- xlim = c(0, 1.1 * max(object$data$time)),
+ xlim = xlim,
ylim = c(-1.2 * maxabs, 1.2 * maxabs), ...)
for(obs_var in obs_vars){
diff --git a/man/mkinresplot.Rd b/man/mkinresplot.Rd index 3f53dd1b..59d19274 100644 --- a/man/mkinresplot.Rd +++ b/man/mkinresplot.Rd @@ -12,6 +12,7 @@ \usage{
mkinresplot(object,
obs_vars = names(object$mkinmod$map),
+ xlim = c(0, 1.1 * max(object$data$time)),
xlab = "Time", ylab = "Residual",
maxabs = "auto", legend = TRUE, lpos = "topright", ...)
}
@@ -23,6 +24,9 @@ A character vector of names of the observed variables for which residuals
should be plotted. Defaults to all observed variables in the model
}
+ \item{xlim}{
+ plot range in x direction.
+ }
\item{xlab}{
Label for the x axis. Defaults to "Time [days]".
}
|