diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2023-04-15 08:44:51 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2023-04-15 08:44:51 +0200 |
| commit | c705a294113ee74a8d408b8b51e4eb2b2822b3a7 (patch) | |
| tree | 4769c1db159429f1054f35097f366cbbf3dc2cb7 | |
| parent | f20a9d81cbcd514ed629b69364cd85a72ac06e95 (diff) | |
Move preprocessing of DMTA data to the test setup
| -rw-r--r-- | tests/testthat/setup_script.R | 12 | ||||
| -rw-r--r-- | tests/testthat/test_dmta.R | 11 |
2 files changed, 12 insertions, 11 deletions
diff --git a/tests/testthat/setup_script.R b/tests/testthat/setup_script.R index 4e2f76ab..b2147fbe 100644 --- a/tests/testthat/setup_script.R +++ b/tests/testthat/setup_script.R @@ -110,3 +110,15 @@ dfop_saem_1 <- saem(mmkin_dfop_1, quiet = TRUE, transformations = "mkin", no_random_effect = c("parent_0", "g_qlogis")) parallel::stopCluster(cl) + +# Preprocess dimethenamid data +dmta_ds <- lapply(1:7, function(i) { + ds_i <- dimethenamid_2018$ds[[i]]$data + ds_i[ds_i$name == "DMTAP", "name"] <- "DMTA" + ds_i$time <- ds_i$time * dimethenamid_2018$f_time_norm[i] + ds_i +}) +names(dmta_ds) <- sapply(dimethenamid_2018$ds, function(ds) ds$title) +dmta_ds[["Elliot"]] <- rbind(dmta_ds[["Elliot 1"]], dmta_ds[["Elliot 2"]]) +dmta_ds[["Elliot 1"]] <- dmta_ds[["Elliot 2"]] <- NULL + diff --git a/tests/testthat/test_dmta.R b/tests/testthat/test_dmta.R index 825c6e80..cd6de341 100644 --- a/tests/testthat/test_dmta.R +++ b/tests/testthat/test_dmta.R @@ -1,16 +1,5 @@ context("Dimethenamid data from 2018") -# Data -dmta_ds <- lapply(1:7, function(i) { - ds_i <- dimethenamid_2018$ds[[i]]$data - ds_i[ds_i$name == "DMTAP", "name"] <- "DMTA" - ds_i$time <- ds_i$time * dimethenamid_2018$f_time_norm[i] - ds_i -}) -names(dmta_ds) <- sapply(dimethenamid_2018$ds, function(ds) ds$title) -dmta_ds[["Elliot"]] <- rbind(dmta_ds[["Elliot 1"]], dmta_ds[["Elliot 2"]]) -dmta_ds[["Elliot 1"]] <- dmta_ds[["Elliot 2"]] <- NULL - test_that("Different backends get consistent results for DFOP tc, dimethenamid data", { skip_on_cran() # Time constraints |