Batch processing for hierarchical fits

- 'R/mhmkin.R': New method for performing multiple hierarchical mkin fits in one function call, optionally in parallel.

- 'R/saem.R': 'logLik' and 'update' methods for 'saem.mmkin' objects.

- 'R/illparms.R': Add methods for 'saem.mmkin' and 'mhmkin' objects.

tests: Use 2 cores on travis, should work according to docs

1 files changed, 13 insertions, 0 deletions

diff --git a/NAMESPACE b/NAMESPACE
index 96cd92e4..50cf1486 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -1,21 +1,29 @@
 # Generated by roxygen2: do not edit by hand
 
+S3method("[",mhmkin)
 S3method("[",mmkin)
+S3method(AIC,mhmkin)
 S3method(AIC,mmkin)
+S3method(BIC,mhmkin)
 S3method(BIC,mmkin)
 S3method(aw,mkinfit)
 S3method(aw,mmkin)
 S3method(confint,mkinfit)
+S3method(convergence,mhmkin)
 S3method(convergence,mmkin)
 S3method(f_time_norm_focus,mkindsg)
 S3method(f_time_norm_focus,numeric)
+S3method(illparms,mhmkin)
 S3method(illparms,mkinfit)
 S3method(illparms,mmkin)
+S3method(illparms,saem.mmkin)
 S3method(intervals,saem.mmkin)
 S3method(loftest,mkinfit)
 S3method(logLik,mkinfit)
+S3method(logLik,saem.mmkin)
 S3method(lrtest,mkinfit)
 S3method(lrtest,mmkin)
+S3method(mhmkin,list)
 S3method(mixed,mmkin)
 S3method(mkinpredict,mkinfit)
 S3method(mkinpredict,mkinmod)
@@ -27,8 +35,11 @@ S3method(plot,mixed.mmkin)
 S3method(plot,mkinfit)
 S3method(plot,mmkin)
 S3method(plot,nafta)
+S3method(print,convergence.mhmkin)
 S3method(print,convergence.mmkin)
+S3method(print,illparms.mhmkin)
 S3method(print,illparms.mmkin)
+S3method(print,mhmkin)
 S3method(print,mixed.mmkin)
 S3method(print,mkinds)
 S3method(print,mkindsg)
@@ -50,6 +61,7 @@ S3method(summary,saem.mmkin)
 S3method(update,mkinfit)
 S3method(update,mmkin)
 S3method(update,nlme.mmkin)
+S3method(update,saem.mmkin)
 export(CAKE_export)
 export(DFOP.solution)
 export(FOMC.solution)
@@ -78,6 +90,7 @@ export(max_twa_hs)
 export(max_twa_parent)
 export(max_twa_sfo)
 export(mean_degparms)
+export(mhmkin)
 export(mixed)
 export(mkin_long_to_wide)
 export(mkin_wide_to_long)