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| author | Johannes Ranke <jranke@uni-bremen.de> | 2020-05-11 05:15:19 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2020-05-11 05:18:32 +0200 |
| commit | 234c9059a95e104917e488a6ddd2313234a96cdc (patch) | |
| tree | f6e54098f79d94578434ef727b62f7cc5d5e79b7 /R/add_err.R | |
| parent | d113cd79b178fdc91aecb894707ed356129dfb75 (diff) | |
Avoid merge() and data.frame() in cost function
also for deSolve and eigenvalue based solutions. This noticeably increases
performance for these methods, see test.log and benchmark vignette.
Diffstat (limited to 'R/add_err.R')
| -rw-r--r-- | R/add_err.R | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/R/add_err.R b/R/add_err.R index a523e9c2..9235223f 100644 --- a/R/add_err.R +++ b/R/add_err.R @@ -76,6 +76,8 @@ add_err <- function(prediction, sdfunc, secondary = c("M1", "M2"), { if (!is.na(seed)) set.seed(seed) + prediction <- as.data.frame(prediction) + # The output of mkinpredict is in wide format d_long = mkin_wide_to_long(prediction, time = "time") |