diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2015-04-16 11:00:53 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2015-04-16 11:00:53 +0200 |
| commit | ec9e65053b214fa30e8b947ccbc47930eeaa01a4 (patch) | |
| tree | 2328b5015f55363e753f6ca346805ccd75fe0d63 /R/mkinfit.R | |
| parent | 10fb9aac470d87afbe2d4ee9e3d1898bfc3f1aa7 (diff) | |
Check compiled mkinmod versions in examples and tests
Tests all pass (Linux)
Diffstat (limited to 'R/mkinfit.R')
| -rw-r--r-- | R/mkinfit.R | 3 |
1 files changed, 3 insertions, 0 deletions
diff --git a/R/mkinfit.R b/R/mkinfit.R index b0df6e8c..38f76674 100644 --- a/R/mkinfit.R +++ b/R/mkinfit.R @@ -28,6 +28,7 @@ mkinfit <- function(mkinmod, observed, fixed_initials = names(mkinmod$diffs)[-1],
solution_type = "auto",
method.ode = "lsoda",
+ use_compiled = "auto",
method.modFit = c("Port", "Marq", "SANN", "Nelder-Mead", "BFGS", "CG", "L-BFGS-B"),
maxit.modFit = "auto",
control.modFit = list(),
@@ -263,6 +264,7 @@ mkinfit <- function(mkinmod, observed, out <- mkinpredict(mkinmod, parms,
odeini, outtimes,
solution_type = solution_type,
+ use_compiled = use_compiled,
method.ode = method.ode,
atol = atol, rtol = rtol, ...)
@@ -282,6 +284,7 @@ mkinfit <- function(mkinmod, observed, out_plot <- mkinpredict(mkinmod, parms,
odeini, outtimes_plot,
solution_type = solution_type,
+ use_compiled = use_compiled,
method.ode = method.ode,
atol = atol, rtol = rtol, ...)
|