diff options
| author | jranke <jranke@edb9625f-4e0d-4859-8d74-9fd3b1da38cb> | 2012-04-16 22:41:06 +0000 |
|---|---|---|
| committer | jranke <jranke@edb9625f-4e0d-4859-8d74-9fd3b1da38cb> | 2012-04-16 22:41:06 +0000 |
| commit | 441dde7f6eafb71ff6d375e57f173e382c83dc61 (patch) | |
| tree | 6fbd7eebeaa504096906d0b40350e19cc42a4853 /R/mkinfit.R | |
| parent | 2fc3f680f8621f9b78d5c10184ee8e9e49206f82 (diff) | |
- Start of an adaptation of mkinfit, but it seems nothing is really needed
- Tests suggest that mkinmod is still buggy
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@27 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
Diffstat (limited to 'R/mkinfit.R')
| -rw-r--r-- | R/mkinfit.R | 6 |
1 files changed, 6 insertions, 0 deletions
diff --git a/R/mkinfit.R b/R/mkinfit.R index f4043568..64edaba0 100644 --- a/R/mkinfit.R +++ b/R/mkinfit.R @@ -35,6 +35,9 @@ mkinfit <- function(mkinmod, observed, # Get the names of the state variables in the model
mod_vars <- names(mkinmod$diffs)
+ # See which variant of the model specification was used
+ use_of_ff <- mkinmod$use_of_ff
+
# Subset observed data with names of observed data in the model
observed <- subset(observed, name %in% names(mkinmod$map))
@@ -47,6 +50,9 @@ mkinfit <- function(mkinmod, observed, for (parmname in defaultpar.names) {
# Default values for rate constants, depending on the parameterisation
if (substr(parmname, 1, 2) == "k_") parms.ini[parmname] = 0.1
+ # Default values for rate constants for reversible binding
+ if (grepl("free_bound$", parmname)) parms.ini[parmname] = 0.1
+ if (grepl("bound_free$", parmname)) parms.ini[parmname] = 0.02
# Default values for formation fractions
if (substr(parmname, 1, 2) == "f_") parms.ini[parmname] = 0.1
# Default values for the FOMC, DFOP and HS models
|