First automatic generation of an nlme model

1 files changed, 0 insertions, 58 deletions

diff --git a/R/mxkin.R b/R/mxkin.R
deleted file mode 100644
index ae7563df..00000000
--- a/R/mxkin.R
+++ /dev/null
@@ -1,58 +0,0 @@
-#' Estimation of parameter distributions from mmkin objects
-#'
-#' @param object An mmkin row object containing several fits of the same model to different datasets
-#' @return A fitted object of class 'mrkin'
-#' @examples
-#' sampling_times = c(0, 1, 3, 7, 14, 28, 60, 90, 120)
-
-m_SFO <- mkinmod(parent = mkinsub("SFO"))
-d_SFO_1 <- mkinpredict(m_SFO,
-  c(k_parent_sink = 0.1),
-  c(parent = 98), sampling_times)
-d_SFO_1_long <- mkin_wide_to_long(d_SFO_1, time = "time")
-d_SFO_2 <- mkinpredict(m_SFO,
-  c(k_parent_sink = 0.05),
-  c(parent = 102), sampling_times)
-d_SFO_2_long <- mkin_wide_to_long(d_SFO_2, time = "time")
-d_SFO_3 <- mkinpredict(m_SFO,
-  c(k_parent_sink = 0.02),
-  c(parent = 103), sampling_times)
-d_SFO_3_long <- mkin_wide_to_long(d_SFO_3, time = "time")
-
-d1 <- add_err(d_SFO_1, function(value) 3, n = 1)
-d2 <- add_err(d_SFO_2, function(value) 2, n = 1)
-d3 <- add_err(d_SFO_3, function(value) 4, n = 1)
-ds <- c(d1 = d1, d2 = d2, d3 = d3)
-
-f <- mmkin("SFO", ds)
-x <- mrkin(f)
-as.numeric(x)
-
-#'
-#' @export
-mrkin <- function(object) {
-  if (nrow(object) > 1) stop("Only row objects allowed")
-  n_d <- ncol(object)
-  p_names <- names(parms(object[[1, 1]]))
-  p_names_trans <- names(parms(object[[1, 1]]))
-
-  p_mat_start_trans <- sapply(object, parms, transformed = TRUE)
-  colnames(p_mat_start_trans) <- colnames(object)
-  p_mat_attr_trans <- attributes(p_mat_start_trans)
-
-  p_dist_names <- p_names[grepl("^log_", p_names)]
-  p_free_names <- p_names[!grepl("^log_", p_names)]
-
-  cost <- function(P) {
-    p_cost_mat <- P
-    attributes(P) <- p_mat_attr_trans
-
-    ll_ds <- 0
-    for (i_d in 1:n_d) {
-      
-    }
-
-  }
-
-  p_mat_start
-}