diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2021-03-19 11:22:07 +0100 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2021-03-19 11:22:07 +0100 |
| commit | 6d6dc7d53bf99b088af3488588574afc832fb7fe (patch) | |
| tree | 6dff11a3e87e9e9f5e8cefbd0009acef91a8eb96 /R/plot.mixed.mmkin.R | |
| parent | cb112e53163f9dc63d439dba50ca051877d67a79 (diff) | |
test_log_parms for plot.mixed.mmkin, roxygen run
Diffstat (limited to 'R/plot.mixed.mmkin.R')
| -rw-r--r-- | R/plot.mixed.mmkin.R | 8 |
1 files changed, 7 insertions, 1 deletions
diff --git a/R/plot.mixed.mmkin.R b/R/plot.mixed.mmkin.R index 21399496..f0682c10 100644 --- a/R/plot.mixed.mmkin.R +++ b/R/plot.mixed.mmkin.R @@ -10,6 +10,10 @@ utils::globalVariables("ds") #' `resplot = "time"`. #' @param pred_over Named list of alternative predictions as obtained #' from [mkinpredict] with a compatible [mkinmod]. +#' @param test_log_parms Passed to [mean_degparms] in the case of an +#' [mixed.mmkin] object +#' @param conf.level Passed to [mean_degparms] in the case of an +#' [mixed.mmkin] object #' @param rel.height.legend The relative height of the legend shown on top #' @param rel.height.bottom The relative height of the bottom plot row #' @param ymax Vector of maximum y axis values @@ -58,6 +62,8 @@ plot.mixed.mmkin <- function(x, xlim = range(x$data$time), resplot = c("predicted", "time"), pred_over = NULL, + test_log_parms = FALSE, + conf.level = 0.6, ymax = "auto", maxabs = "auto", ncol.legend = ifelse(length(i) <= 3, length(i) + 1, ifelse(length(i) <= 8, 3, 4)), nrow.legend = ceiling((length(i) + 1) / ncol.legend), @@ -76,7 +82,7 @@ plot.mixed.mmkin <- function(x, backtransform = TRUE if (identical(class(x), "mixed.mmkin")) { - degparms_pop <- mean_degparms(x$mmkin) + degparms_pop <- mean_degparms(x$mmkin, test_log_parms = test_log_parms, conf.level = conf.level) degparms_tmp <- parms(x$mmkin, transformed = TRUE) degparms_i <- as.data.frame(t(degparms_tmp[setdiff(rownames(degparms_tmp), names(fit_1$errparms)), ])) |