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| author | Johannes Ranke <jranke@uni-bremen.de> | 2020-06-15 09:05:27 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2020-06-15 09:05:27 +0200 |
| commit | 068b168d78c9550a77514e0c39923f8d40b48b03 (patch) | |
| tree | bea0c6801e687d4e0f326ddbdbf5a0a27df8f355 /R/summary_DFOP_FOCUS_C.txt | |
| parent | e6f9e9ca89e35e610d9895b979f1351a47451db0 (diff) | |
Fix a bug, update for current vdiffr
Vignette FOCUS_L failed as I had introduced a bug in the handling of
warnings.
Current vdiffr only runs visual tests if R < 4.1.0, skipping r-devel for now,
see https://github.com/r-lib/vdiffr/commit/630a29d013361fd63fea242f531e2db6aef37919
Diffstat (limited to 'R/summary_DFOP_FOCUS_C.txt')
| -rw-r--r-- | R/summary_DFOP_FOCUS_C.txt | 82 |
1 files changed, 0 insertions, 82 deletions
diff --git a/R/summary_DFOP_FOCUS_C.txt b/R/summary_DFOP_FOCUS_C.txt deleted file mode 100644 index ab64a588..00000000 --- a/R/summary_DFOP_FOCUS_C.txt +++ /dev/null @@ -1,82 +0,0 @@ -mkin version used for fitting: Dummy 0.0 for testing -R version used for fitting: Dummy R version for testing -Date of fit: Dummy date for testing -Date of summary: Dummy date for testing - -Equations: -d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * - time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * time))) - * parent - -Model predictions using solution type analytical - -Fitted using test 0 model solutions performed in test time 0 s - -Error model: Constant variance - -Error model algorithm: OLS - -Starting values for parameters to be optimised: - value type -parent_0 85.10 state -k1 0.10 deparm -k2 0.01 deparm -g 0.50 deparm - -Starting values for the transformed parameters actually optimised: - value lower upper -parent_0 85.100000 -Inf Inf -log_k1 -2.302585 -Inf Inf -log_k2 -4.605170 -Inf Inf -g_ilr 0.000000 -Inf Inf - -Fixed parameter values: -None - -Results: - - AIC BIC logLik - 29.02372 30.00984 -9.511861 - -Optimised, transformed parameters with symmetric confidence intervals: - Estimate Std. Error Lower Upper -parent_0 85.0000 0.66620 83.1500 86.8500 -log_k1 -0.7775 0.03380 -0.8713 -0.6836 -log_k2 -4.0260 0.13100 -4.3890 -3.6620 -g_ilr 1.2490 0.05811 1.0870 1.4100 -sigma 0.6962 0.16410 0.2406 1.1520 - -Parameter correlation: -[1] "Correlation matrix is platform dependent, not tested" - -Backtransformed parameters: -Confidence intervals for internally transformed parameters are asymmetric. -t-test (unrealistically) based on the assumption of normal distribution -for estimators of untransformed parameters. - Estimate t value Pr(>t) Lower Upper -parent_0 85.00000 127.600 1.131e-08 83.15000 86.85000 -k1 0.45960 29.580 3.887e-06 0.41840 0.50480 -k2 0.01785 7.636 7.901e-04 0.01241 0.02568 -g 0.85390 83.310 6.221e-08 0.82310 0.88020 -sigma 0.69620 4.243 6.618e-03 0.24060 1.15200 - -FOCUS Chi2 error levels in percent: - err.min n.optim df -All data 2.661 4 5 -parent 2.661 4 5 - -Estimated disappearance times: - DT50 DT90 DT50_k1 DT50_k2 -parent 1.887 21.25 1.508 38.83 - -Data: - time variable observed predicted residual - 0 parent 85.1 85.003 0.09726 - 1 parent 57.9 58.039 -0.13912 - 3 parent 29.9 30.054 -0.15351 - 7 parent 14.6 13.866 0.73388 - 14 parent 9.7 9.787 -0.08657 - 28 parent 6.6 7.532 -0.93205 - 63 parent 4.0 4.033 -0.03269 - 91 parent 3.9 2.447 1.45348 - 119 parent 0.6 1.484 -0.88424 |