diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2022-08-10 14:21:26 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2022-08-10 14:28:37 +0200 |
| commit | 2890a954d8443e1aab04a5c5fa128574fa6cde87 (patch) | |
| tree | 322a214fd870acd28732bc268f23e8bd8d11a79f /R | |
| parent | 4572a31a440c967dfc66222c0214fccd087ac338 (diff) | |
Naming of random effects for reduced parameter models
Diffstat (limited to 'R')
| -rw-r--r-- | R/intervals.R | 5 | ||||
| -rw-r--r-- | R/summary.saem.mmkin.R | 13 |
2 files changed, 12 insertions, 6 deletions
diff --git a/R/intervals.R b/R/intervals.R index 258eb4ad..705ef6eb 100644 --- a/R/intervals.R +++ b/R/intervals.R @@ -77,8 +77,9 @@ intervals.saem.mmkin <- function(object, level = 0.95, backtransform = TRUE, ... attr(confint_ret, "label") <- "Fixed effects:" # Random effects - ranef_ret <- as.matrix(conf.int[paste0("SD.", pnames), c("lower", "est.", "upper")]) - rownames(ranef_ret) <- paste0(gsub("SD\\.", "sd(", rownames(ranef_ret)), ")") + sdnames <- intersect(rownames(conf.int), paste("SD", pnames, sep = ".")) + ranef_ret <- as.matrix(conf.int[sdnames, c("lower", "est.", "upper")]) + rownames(ranef_ret) <- paste0(gsub("SD\\.", "sd(", sdnames), ")") attr(ranef_ret, "label") <- "Random effects:" diff --git a/R/summary.saem.mmkin.R b/R/summary.saem.mmkin.R index fa52a579..f41e7e20 100644 --- a/R/summary.saem.mmkin.R +++ b/R/summary.saem.mmkin.R @@ -73,7 +73,12 @@ #' f_mmkin_dfop_sfo <- mmkin(list(dfop_sfo), ds_syn_dfop_sfo, #' quiet = TRUE, error_model = "tc", cores = 5) #' f_saem_dfop_sfo <- saem(f_mmkin_dfop_sfo) -#' summary(f_saem_dfop_sfo, data = TRUE) +#' print(f_saem_dfop_sfo) +#' illparms(f_saem_dfop_sfo) +#' f_saem_dfop_sfo_2 <- update(f_saem_dfop_sfo, covariance.model = diag(c(0, 0, 1, 1, 1, 0))) +#' illparms(f_saem_dfop_sfo_2) +#' intervals(f_saem_dfop_sfo_2) +#' summary(f_saem_dfop_sfo_2, data = TRUE) #' } #' #' @export @@ -138,8 +143,8 @@ summary.saem.mmkin <- function(object, data = FALSE, verbose = FALSE, distimes = list(pnames, pnames)) # Random effects - rnames <- paste0("SD.", pnames) - confint_ranef <- as.matrix(conf.int[rnames, c("estimate", "lower", "upper")]) + sdnames <- intersect(rownames(conf.int), paste0("SD.", pnames)) + confint_ranef <- as.matrix(conf.int[sdnames, c("estimate", "lower", "upper")]) colnames(confint_ranef)[1] <- "est." # Error model @@ -202,7 +207,7 @@ print.summary.saem.mmkin <- function(x, digits = max(3, getOption("digits") - 3) cat("\nModel predictions using solution type", x$solution_type, "\n") cat("\nFitted in", x$time[["elapsed"]], "s\n") - cat("Using", paste(x$so@options$nbiter.saemix, collapse = ", "), + cat("Using", paste(x$so@options$nbiter.saemix, collapse = ", "), "iterations and", x$so@options$nb.chains, "chains\n") cat("\nVariance model: ") |