diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2015-06-20 01:06:24 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2015-06-20 03:59:56 +0200 |
| commit | 062b9cc1d084e8bb5e552076fc48ade4b3050644 (patch) | |
| tree | bfb8acaf64fbbefbd7423cf6d0cfdb5119120a26 /README.md | |
| parent | 6281424beafe531c9891670c3227ab12e9a21990 (diff) | |
Low-level generation of compiled models
As it is unclear if and when ccSolve will be published on CRAN,
the generation, compilation and use of the C version of the
system of differential equations was developed for mkin, inspired and
guided by the code from the ccSolve package. Many thanks again to
Karline Soetaert for all of her work on this and other R packages.
Now all model types, including the Hockey-Stick model for the parent
compund and the IORE model for parent and/or metabolites can be compiled.
Diffstat (limited to 'README.md')
| -rw-r--r-- | README.md | 10 |
1 files changed, 6 insertions, 4 deletions
@@ -120,10 +120,12 @@ documentation or the package vignettes referenced from the These have decreasing efficiency, and are automatically chosen by default. * As of mkin 0.9-36, model solution for models with more than one observed - variable is based on the - [`ccSolve`](https://github.com/karlines/ccSolve) package, if installed. - This is even faster than eigenvalue based solution, at least in the example - shown in the [vignette `compiled_models`](http://rawgit.com/jranke/mkin/master/vignettes/compiled_models.html) + variable is based on the inline package. This is even faster than eigenvalue + based solution, at least in the example shown in the + [vignette `compiled_models`](http://rawgit.com/jranke/mkin/master/vignettes/compiled_models.html). + The autogeneration of C code was + inspired by the [`ccSolve`](https://github.com/karlines/ccSolve) package. Thanks + to Karline Soetaert for her work on that. * Model optimisation with [`mkinfit`](http://kinfit.r-forge.r-project.org/mkin_static/mkinfit.html) internally using the `modFit` function from the `FME` package, |