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authorJohannes Ranke <jranke@uni-bremen.de>2016-10-06 09:40:35 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2016-10-06 09:40:35 +0200
commit7c62da1269e8910a210ba1917d4dc62d186d5606 (patch)
tree57da1e788f84fe95352ff66d22a9da56dc86f9c3 /docs/IORE.solution.html
parent38f9e15f0c972c1516ae737a2bca8d7789581bbd (diff)
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-<!DOCTYPE html>
-<html lang="en">
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- <meta charset="utf-8">
-<title>IORE.solution. mkin 0.9.44.9000</title>
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- <li><a href="index.html">Home</a></li>
- <li><a href="reference.html">Reference</a></li>
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- <header>
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-
- <h1> Indeterminate order rate equation kinetics </h1>
-
-<div class="row">
- <div class="span8">
- <h2>Usage</h2>
- <pre><span class="functioncall"><a href='IORE.solution.html'>IORE.solution</a></span><span class="keyword">(</span><span class="symbol">t</span><span class="keyword">,</span> <span class="symbol">parent.0</span><span class="keyword">,</span> <span class="symbol">k__iore</span><span class="keyword">,</span> <span class="symbol">N</span><span class="keyword">)</span></pre>
-
- <h2>Arguments</h2>
- <dl>
- <dt>t</dt>
- <dd> Time. </dd>
- <dt>parent.0</dt>
- <dd> Starting value for the response variable at time zero. </dd>
- <dt>k__iore</dt>
- <dd> Rate constant. Note that this depends on the concentration units used. </dd>
- <dt>N</dt>
- <dd> Exponent describing the nonlinearity of the rate equation </dd>
- </dl>
-
- <div class="Description">
- <h2>Description</h2>
-
- <p>Function describing exponential decline from a defined starting value, with
- a concentration dependent rate constant.</p>
-
- </div>
-
- <div class="Note">
- <h2>Note</h2>
-
- <p>The solution of the IORE kinetic model reduces to the
- <code><a href='SFO.solution.html'>SFO.solution</a></code> if N = 1.
- The parameters of the IORE model can be transformed to equivalent parameters
- of the FOMC mode - see the NAFTA guidance for details.</p>
-
- </div>
-
- <div class="Value">
- <h2>Value</h2>
-
- <p><dl>
- The value of the response variable at time <code>t</code>.
-</dl></p>
-
- </div>
-
- <div class="References">
- <h2>References</h2>
-
- <p>NAFTA Technical Working Group on Pesticides (not dated) Guidance for
- Evaluating and Calculating Degradation Kinetics in Environmental
- Media</p>
-
- </div>
-
- <h2 id="examples">Examples</h2>
- <pre class="examples"><div class='input'> <span class="functioncall"><a href='http://www.rdocumentation.org/packages/graphics/topics/plot'>plot</a></span><span class="keyword">(</span><span class="keyword">function</span><span class="keyword">(</span><span class="formalargs">x</span><span class="keyword">)</span> <span class="functioncall"><a href='IORE.solution.html'>IORE.solution</a></span><span class="keyword">(</span><span class="symbol">x</span><span class="keyword">,</span> <span class="number">100</span><span class="keyword">,</span> <span class="number">0.2</span><span class="keyword">,</span> <span class="number">1.3</span><span class="keyword">)</span><span class="keyword">,</span> <span class="number">0</span><span class="keyword">,</span> <span class="number">2</span><span class="keyword">,</span>
- <span class="argument">ylim</span> <span class="argument">=</span> <span class="functioncall"><a href='http://www.rdocumentation.org/packages/base/topics/c'>c</a></span><span class="keyword">(</span><span class="number">0</span><span class="keyword">,</span> <span class="number">100</span><span class="keyword">)</span><span class="keyword">)</span></div>
-<p><img src='IORE.solution-2.png' alt='' width='540' height='400' /></p>
-<div class='input'> <span class="symbol">fit.fomc</span> <span class="assignement">&lt;-</span> <span class="functioncall"><a href='mkinfit.html'>mkinfit</a></span><span class="keyword">(</span><span class="string">"FOMC"</span><span class="keyword">,</span> <span class="symbol">FOCUS_2006_C</span><span class="keyword">,</span> <span class="argument">quiet</span> <span class="argument">=</span> <span class="number">TRUE</span><span class="keyword">)</span>
- <span class="symbol">fit.iore</span> <span class="assignement">&lt;-</span> <span class="functioncall"><a href='mkinfit.html'>mkinfit</a></span><span class="keyword">(</span><span class="string">"IORE"</span><span class="keyword">,</span> <span class="symbol">FOCUS_2006_C</span><span class="keyword">,</span> <span class="argument">quiet</span> <span class="argument">=</span> <span class="number">TRUE</span><span class="keyword">)</span>
- <span class="symbol">fit.iore.deS</span> <span class="assignement">&lt;-</span> <span class="functioncall"><a href='mkinfit.html'>mkinfit</a></span><span class="keyword">(</span><span class="string">"IORE"</span><span class="keyword">,</span> <span class="symbol">FOCUS_2006_C</span><span class="keyword">,</span> <span class="argument">solution_type</span> <span class="argument">=</span> <span class="string">"deSolve"</span><span class="keyword">,</span> <span class="argument">quiet</span> <span class="argument">=</span> <span class="number">TRUE</span><span class="keyword">)</span>
-
- <span class="functioncall"><a href='http://www.rdocumentation.org/packages/base/topics/print'>print</a></span><span class="keyword">(</span><span class="functioncall"><a href='http://www.rdocumentation.org/packages/base/topics/data.frame'>data.frame</a></span><span class="keyword">(</span><span class="functioncall"><a href='http://www.rdocumentation.org/packages/stats/topics/coef'>coef</a></span><span class="keyword">(</span><span class="symbol">fit.fomc</span><span class="keyword">)</span><span class="keyword">,</span> <span class="functioncall"><a href='http://www.rdocumentation.org/packages/stats/topics/coef'>coef</a></span><span class="keyword">(</span><span class="symbol">fit.iore</span><span class="keyword">)</span><span class="keyword">,</span> <span class="functioncall"><a href='http://www.rdocumentation.org/packages/stats/topics/coef'>coef</a></span><span class="keyword">(</span><span class="symbol">fit.iore.deS</span><span class="keyword">)</span><span class="keyword">,</span>
- <span class="argument">row.names</span> <span class="argument">=</span> <span class="functioncall"><a href='http://www.rdocumentation.org/packages/base/topics/paste'>paste</a></span><span class="keyword">(</span><span class="string">"model par"</span><span class="keyword">,</span> <span class="number">1</span><span class="keyword">:</span><span class="number">3</span><span class="keyword">)</span><span class="keyword">)</span><span class="keyword">)</span></div>
-<div class='output'> coef.fit.fomc. coef.fit.iore. coef.fit.iore.deS.
-model par 1 85.87489063 85.874891 85.874890
-model par 2 0.05192238 -4.826631 -4.826631
-model par 3 0.65096665 1.949403 1.949403
-</div>
-<div class='input'> <span class="functioncall"><a href='http://www.rdocumentation.org/packages/base/topics/print'>print</a></span><span class="keyword">(</span><span class="functioncall"><a href='http://www.rdocumentation.org/packages/base/topics/cbind'>rbind</a></span><span class="keyword">(</span><span class="argument">fomc</span> <span class="argument">=</span> <span class="functioncall"><a href='endpoints.html'>endpoints</a></span><span class="keyword">(</span><span class="symbol">fit.fomc</span><span class="keyword">)</span><span class="keyword">$</span><span class="symbol">distimes</span><span class="keyword">,</span> <span class="argument">iore</span> <span class="argument">=</span> <span class="functioncall"><a href='endpoints.html'>endpoints</a></span><span class="keyword">(</span><span class="symbol">fit.iore</span><span class="keyword">)</span><span class="keyword">$</span><span class="symbol">distimes</span><span class="keyword">,</span>
- <span class="argument">iore.deS</span> <span class="argument">=</span> <span class="functioncall"><a href='endpoints.html'>endpoints</a></span><span class="keyword">(</span><span class="symbol">fit.iore</span><span class="keyword">)</span><span class="keyword">$</span><span class="symbol">distimes</span><span class="keyword">)</span><span class="keyword">)</span></div>
-<div class='output'> DT50 DT90 DT50back
-fomc 1.785233 15.1479 4.559973
-iore 1.785233 15.1479 4.559973
-iore.deS 1.785233 15.1479 4.559973
-</div></pre>
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