Another rebuild of the static docs

Now with rbenchmark installed, to get results for the compiled_models
vignette

1 files changed, 22 insertions, 25 deletions

diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html
index 5de06ad5..196a0c4f 100644
--- a/docs/articles/FOCUS_L.html
+++ b/docs/articles/FOCUS_L.html
@@ -9,10 +9,7 @@
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-<script src="../jquery.sticky-kit.min.js"></script><script src="../pkgdown.js"></script><meta property="og:title" content="Example evaluation of FOCUS Laboratory Data L1 to L3">
-<meta property="og:description" content="">
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@@ -80,7 +77,7 @@
       <h1>Example evaluation of FOCUS Laboratory Data L1 to L3</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2018-03-01</h4>
+            <h4 class="date">2018-03-09</h4>
           </div>
 
     
@@ -103,15 +100,15 @@ FOCUS_<span class="dv">2006</span>_L1_mkin &lt;-<span class="st"> </span><span c
 <span class="kw">summary</span>(m.L1.SFO)</code></pre></div>
 <pre><code>## mkin version:    0.9.46.3 
 ## R version:       3.4.3 
-## Date of fit:     Thu Mar  1 14:31:57 2018 
-## Date of summary: Thu Mar  1 14:31:57 2018 
+## Date of fit:     Fri Mar  9 23:09:50 2018 
+## Date of summary: Fri Mar  9 23:09:50 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 37 model solutions performed in 0.24 s
+## Fitted with method Port using 37 model solutions performed in 0.264 s
 ## 
 ## Weighting: none
 ## 
@@ -194,15 +191,15 @@ FOCUS_<span class="dv">2006</span>_L1_mkin &lt;-<span class="st"> </span><span c
 <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(m.L1.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
 <pre><code>## mkin version:    0.9.46.3 
 ## R version:       3.4.3 
-## Date of fit:     Thu Mar  1 14:31:59 2018 
-## Date of summary: Thu Mar  1 14:32:00 2018 
+## Date of fit:     Fri Mar  9 23:09:52 2018 
+## Date of summary: Fri Mar  9 23:09:52 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 611 model solutions performed in 1.375 s
+## Fitted with method Port using 611 model solutions performed in 1.451 s
 ## 
 ## Weighting: none
 ## 
@@ -289,15 +286,15 @@ FOCUS_<span class="dv">2006</span>_L2_mkin &lt;-<span class="st"> </span><span c
 <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(m.L2.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
 <pre><code>## mkin version:    0.9.46.3 
 ## R version:       3.4.3 
-## Date of fit:     Thu Mar  1 14:32:00 2018 
-## Date of summary: Thu Mar  1 14:32:00 2018 
+## Date of fit:     Fri Mar  9 23:09:53 2018 
+## Date of summary: Fri Mar  9 23:09:53 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 81 model solutions performed in 0.158 s
+## Fitted with method Port using 81 model solutions performed in 0.175 s
 ## 
 ## Weighting: none
 ## 
@@ -360,8 +357,8 @@ FOCUS_<span class="dv">2006</span>_L2_mkin &lt;-<span class="st"> </span><span c
 <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(m.L2.DFOP, <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
 <pre><code>## mkin version:    0.9.46.3 
 ## R version:       3.4.3 
-## Date of fit:     Thu Mar  1 14:32:01 2018 
-## Date of summary: Thu Mar  1 14:32:01 2018 
+## Date of fit:     Fri Mar  9 23:09:54 2018 
+## Date of summary: Fri Mar  9 23:09:54 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -370,7 +367,7 @@ FOCUS_<span class="dv">2006</span>_L2_mkin &lt;-<span class="st"> </span><span c
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 336 model solutions performed in 0.708 s
+## Fitted with method Port using 336 model solutions performed in 0.739 s
 ## 
 ## Weighting: none
 ## 
@@ -452,8 +449,8 @@ mm.L3 &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mmkin
 <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(mm.L3[[<span class="st">"DFOP"</span>, <span class="dv">1</span>]])</code></pre></div>
 <pre><code>## mkin version:    0.9.46.3 
 ## R version:       3.4.3 
-## Date of fit:     Thu Mar  1 14:32:02 2018 
-## Date of summary: Thu Mar  1 14:32:02 2018 
+## Date of fit:     Fri Mar  9 23:09:55 2018 
+## Date of summary: Fri Mar  9 23:09:55 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -462,7 +459,7 @@ mm.L3 &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mmkin
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 137 model solutions performed in 0.287 s
+## Fitted with method Port using 137 model solutions performed in 0.293 s
 ## 
 ## Weighting: none
 ## 
@@ -553,15 +550,15 @@ mm.L4 &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mmkin
 <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(mm.L4[[<span class="st">"SFO"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
 <pre><code>## mkin version:    0.9.46.3 
 ## R version:       3.4.3 
-## Date of fit:     Thu Mar  1 14:32:03 2018 
-## Date of summary: Thu Mar  1 14:32:03 2018 
+## Date of fit:     Fri Mar  9 23:09:55 2018 
+## Date of summary: Fri Mar  9 23:09:56 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 46 model solutions performed in 0.089 s
+## Fitted with method Port using 46 model solutions performed in 0.09 s
 ## 
 ## Weighting: none
 ## 
@@ -613,8 +610,8 @@ mm.L4 &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mmkin
 <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(mm.L4[[<span class="st">"FOMC"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
 <pre><code>## mkin version:    0.9.46.3 
 ## R version:       3.4.3 
-## Date of fit:     Thu Mar  1 14:32:03 2018 
-## Date of summary: Thu Mar  1 14:32:03 2018 
+## Date of fit:     Fri Mar  9 23:09:56 2018 
+## Date of summary: Fri Mar  9 23:09:56 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent