Static documentation rebuilt by pkgdown::build_site(run_dont_run = TRUE)

Using branch 'jranke' on jranke/pkgdown, fixing issues
hadley/pgkdown#178 and hadley/pkgdown#213

Remove plot=TRUE from mkinfit calls also in dontrun sections of examples
to avoid a flood png files documenting the progress of the fit.

1 files changed, 22 insertions, 22 deletions

diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html
index e7ec5308..c3009e4d 100644
--- a/docs/articles/FOCUS_L.html
+++ b/docs/articles/FOCUS_L.html
@@ -41,7 +41,7 @@
       <h1>Example evaluation of FOCUS Laboratory Data L1 to L3</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2016-11-17</h4>
+            <h4 class="date">2016-11-18</h4>
           </div>
 
     
@@ -63,15 +63,15 @@ FOCUS_2006_L1_mkin &lt;-<span class="st"> </span><span class="kw"><a href="../re
 <span class="kw">summary</span>(m.L1.SFO)</code></pre></div>
 <pre><code>## mkin version:    0.9.44.9000 
 ## R version:       3.3.2 
-## Date of fit:     Thu Nov 17 22:58:18 2016 
-## Date of summary: Thu Nov 17 22:58:18 2016 
+## Date of fit:     Fri Nov 18 15:22:03 2016 
+## Date of summary: Fri Nov 18 15:22:03 2016 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 37 model solutions performed in 0.103 s
+## Fitted with method Port using 37 model solutions performed in 0.09 s
 ## 
 ## Weighting: none
 ## 
@@ -156,8 +156,8 @@ FOCUS_2006_L1_mkin &lt;-<span class="st"> </span><span class="kw"><a href="../re
 <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(m.L1.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
 <pre><code>## mkin version:    0.9.44.9000 
 ## R version:       3.3.2 
-## Date of fit:     Thu Nov 17 22:58:19 2016 
-## Date of summary: Thu Nov 17 22:58:19 2016 
+## Date of fit:     Fri Nov 18 15:22:04 2016 
+## Date of summary: Fri Nov 18 15:22:04 2016 
 ## 
 ## 
 ## Warning: Optimisation by method Port did not converge.
@@ -169,7 +169,7 @@ FOCUS_2006_L1_mkin &lt;-<span class="st"> </span><span class="kw"><a href="../re
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 188 model solutions performed in 0.462 s
+## Fitted with method Port using 188 model solutions performed in 0.445 s
 ## 
 ## Weighting: none
 ## 
@@ -253,15 +253,15 @@ FOCUS_2006_L2_mkin &lt;-<span class="st"> </span><span class="kw"><a href="../re
 <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(m.L2.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
 <pre><code>## mkin version:    0.9.44.9000 
 ## R version:       3.3.2 
-## Date of fit:     Thu Nov 17 22:58:20 2016 
-## Date of summary: Thu Nov 17 22:58:20 2016 
+## Date of fit:     Fri Nov 18 15:22:05 2016 
+## Date of summary: Fri Nov 18 15:22:05 2016 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 81 model solutions performed in 0.195 s
+## Fitted with method Port using 81 model solutions performed in 0.19 s
 ## 
 ## Weighting: none
 ## 
@@ -323,8 +323,8 @@ FOCUS_2006_L2_mkin &lt;-<span class="st"> </span><span class="kw"><a href="../re
 <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(m.L2.DFOP, <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
 <pre><code>## mkin version:    0.9.44.9000 
 ## R version:       3.3.2 
-## Date of fit:     Thu Nov 17 22:58:21 2016 
-## Date of summary: Thu Nov 17 22:58:21 2016 
+## Date of fit:     Fri Nov 18 15:22:06 2016 
+## Date of summary: Fri Nov 18 15:22:06 2016 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -333,7 +333,7 @@ FOCUS_2006_L2_mkin &lt;-<span class="st"> </span><span class="kw"><a href="../re
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 336 model solutions performed in 0.882 s
+## Fitted with method Port using 336 model solutions performed in 0.803 s
 ## 
 ## Weighting: none
 ## 
@@ -412,8 +412,8 @@ mm.L3 &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mmkin
 <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(mm.L3[[<span class="st">"DFOP"</span>, <span class="dv">1</span>]])</code></pre></div>
 <pre><code>## mkin version:    0.9.44.9000 
 ## R version:       3.3.2 
-## Date of fit:     Thu Nov 17 22:58:22 2016 
-## Date of summary: Thu Nov 17 22:58:22 2016 
+## Date of fit:     Fri Nov 18 15:22:07 2016 
+## Date of summary: Fri Nov 18 15:22:07 2016 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -422,7 +422,7 @@ mm.L3 &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mmkin
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 137 model solutions performed in 0.338 s
+## Fitted with method Port using 137 model solutions performed in 0.329 s
 ## 
 ## Weighting: none
 ## 
@@ -512,15 +512,15 @@ mm.L4 &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mmkin
 <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(mm.L4[[<span class="st">"SFO"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
 <pre><code>## mkin version:    0.9.44.9000 
 ## R version:       3.3.2 
-## Date of fit:     Thu Nov 17 22:58:22 2016 
-## Date of summary: Thu Nov 17 22:58:23 2016 
+## Date of fit:     Fri Nov 18 15:22:08 2016 
+## Date of summary: Fri Nov 18 15:22:08 2016 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 46 model solutions performed in 0.114 s
+## Fitted with method Port using 46 model solutions performed in 0.109 s
 ## 
 ## Weighting: none
 ## 
@@ -572,15 +572,15 @@ mm.L4 &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mmkin
 <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(mm.L4[[<span class="st">"FOMC"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
 <pre><code>## mkin version:    0.9.44.9000 
 ## R version:       3.3.2 
-## Date of fit:     Thu Nov 17 22:58:23 2016 
-## Date of summary: Thu Nov 17 22:58:23 2016 
+## Date of fit:     Fri Nov 18 15:22:08 2016 
+## Date of summary: Fri Nov 18 15:22:08 2016 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 66 model solutions performed in 0.151 s
+## Fitted with method Port using 66 model solutions performed in 0.15 s
 ## 
 ## Weighting: none
 ##