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authorJohannes Ranke <jranke@uni-bremen.de>2018-07-18 15:18:30 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2018-07-18 15:58:46 +0200
commit0b98c459c30a0629a728acf6b311de035c55fb64 (patch)
treef146faf4802da38862aa14b0268265f3fad9ba34 /docs/articles/FOCUS_L.html
parentd3ed95f2a0a43ed74b02ea90e35d043ed4e1e72f (diff)
Correct references to the Rocke and Lorenzato model
Rename 'sigma_rl' to 'sigma_twocomp' as the Rocke and Lorenzato model assumes lognormal distribution for large y. Rebuild static documentation.
Diffstat (limited to 'docs/articles/FOCUS_L.html')
-rw-r--r--docs/articles/FOCUS_L.html60
1 files changed, 30 insertions, 30 deletions
diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html
index fcd0719d..72c293b9 100644
--- a/docs/articles/FOCUS_L.html
+++ b/docs/articles/FOCUS_L.html
@@ -29,7 +29,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.1</span>
+ <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.2</span>
</span>
</div>
@@ -84,7 +84,7 @@
<h1>Example evaluation of FOCUS Laboratory Data L1 to L3</h1>
<h4 class="author">Johannes Ranke</h4>
- <h4 class="date">2018-06-06</h4>
+ <h4 class="date">2018-07-18</h4>
<div class="hidden name"><code>FOCUS_L.Rmd</code></div>
@@ -109,16 +109,16 @@ FOCUS_<span class="dv">2006</span>_L1_mkin &lt;-<span class="st"> </span><span c
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">m.L1.SFO &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mkinfit.html">mkinfit</a></span>(<span class="st">"SFO"</span>, FOCUS_<span class="dv">2006</span>_L1_mkin, <span class="dt">quiet =</span> <span class="ot">TRUE</span>)
<span class="kw">summary</span>(m.L1.SFO)</code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.1
-## R version used for fitting: 3.5.0
-## Date of fit: Wed Jun 6 01:21:52 2018
-## Date of summary: Wed Jun 6 01:21:52 2018
+## R version used for fitting: 3.5.1
+## Date of fit: Wed Jul 18 15:16:17 2018
+## Date of summary: Wed Jul 18 15:16:17 2018
##
## Equations:
## d_parent/dt = - k_parent_sink * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 37 model solutions performed in 0.094 s
+## Fitted with method Port using 37 model solutions performed in 0.081 s
##
## Weighting: none
##
@@ -200,16 +200,16 @@ FOCUS_<span class="dv">2006</span>_L1_mkin &lt;-<span class="st"> </span><span c
<p><img src="FOCUS_L_files/figure-html/unnamed-chunk-6-1.png" width="576"></p>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(m.L1.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.1
-## R version used for fitting: 3.5.0
-## Date of fit: Wed Jun 6 01:21:53 2018
-## Date of summary: Wed Jun 6 01:21:53 2018
+## R version used for fitting: 3.5.1
+## Date of fit: Wed Jul 18 15:16:19 2018
+## Date of summary: Wed Jul 18 15:16:19 2018
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 611 model solutions performed in 1.369 s
+## Fitted with method Port using 611 model solutions performed in 1.304 s
##
## Weighting: none
##
@@ -295,16 +295,16 @@ FOCUS_<span class="dv">2006</span>_L2_mkin &lt;-<span class="st"> </span><span c
<p><img src="FOCUS_L_files/figure-html/unnamed-chunk-9-1.png" width="672"></p>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(m.L2.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.1
-## R version used for fitting: 3.5.0
-## Date of fit: Wed Jun 6 01:21:54 2018
-## Date of summary: Wed Jun 6 01:21:54 2018
+## R version used for fitting: 3.5.1
+## Date of fit: Wed Jul 18 15:16:19 2018
+## Date of summary: Wed Jul 18 15:16:19 2018
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 81 model solutions performed in 0.173 s
+## Fitted with method Port using 81 model solutions performed in 0.175 s
##
## Weighting: none
##
@@ -366,9 +366,9 @@ FOCUS_<span class="dv">2006</span>_L2_mkin &lt;-<span class="st"> </span><span c
<p><img src="FOCUS_L_files/figure-html/unnamed-chunk-10-1.png" width="672"></p>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(m.L2.DFOP, <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.1
-## R version used for fitting: 3.5.0
-## Date of fit: Wed Jun 6 01:21:55 2018
-## Date of summary: Wed Jun 6 01:21:55 2018
+## R version used for fitting: 3.5.1
+## Date of fit: Wed Jul 18 15:16:20 2018
+## Date of summary: Wed Jul 18 15:16:20 2018
##
## Equations:
## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -377,7 +377,7 @@ FOCUS_<span class="dv">2006</span>_L2_mkin &lt;-<span class="st"> </span><span c
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 336 model solutions performed in 0.76 s
+## Fitted with method Port using 336 model solutions performed in 0.721 s
##
## Weighting: none
##
@@ -458,9 +458,9 @@ mm.L3 &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mmkin
<p>We can extract the summary and plot for <em>e.g.</em> the DFOP fit, using square brackets for indexing which will result in the use of the summary and plot functions working on mkinfit objects.</p>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(mm.L3[[<span class="st">"DFOP"</span>, <span class="dv">1</span>]])</code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.1
-## R version used for fitting: 3.5.0
-## Date of fit: Wed Jun 6 01:21:56 2018
-## Date of summary: Wed Jun 6 01:21:56 2018
+## R version used for fitting: 3.5.1
+## Date of fit: Wed Jul 18 15:16:21 2018
+## Date of summary: Wed Jul 18 15:16:21 2018
##
## Equations:
## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -469,7 +469,7 @@ mm.L3 &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mmkin
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 137 model solutions performed in 0.33 s
+## Fitted with method Port using 137 model solutions performed in 0.294 s
##
## Weighting: none
##
@@ -559,16 +559,16 @@ mm.L4 &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mmkin
<p>The <span class="math inline">\(\chi^2\)</span> error level of 3.3% as well as the plot suggest that the SFO model fits very well. The error level at which the <span class="math inline">\(\chi^2\)</span> test passes is slightly lower for the FOMC model. However, the difference appears negligible.</p>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(mm.L4[[<span class="st">"SFO"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.1
-## R version used for fitting: 3.5.0
-## Date of fit: Wed Jun 6 01:21:56 2018
-## Date of summary: Wed Jun 6 01:21:57 2018
+## R version used for fitting: 3.5.1
+## Date of fit: Wed Jul 18 15:16:22 2018
+## Date of summary: Wed Jul 18 15:16:22 2018
##
## Equations:
## d_parent/dt = - k_parent_sink * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 46 model solutions performed in 0.099 s
+## Fitted with method Port using 46 model solutions performed in 0.092 s
##
## Weighting: none
##
@@ -619,16 +619,16 @@ mm.L4 &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mmkin
## parent 106 352</code></pre>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(mm.L4[[<span class="st">"FOMC"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.1
-## R version used for fitting: 3.5.0
-## Date of fit: Wed Jun 6 01:21:57 2018
-## Date of summary: Wed Jun 6 01:21:57 2018
+## R version used for fitting: 3.5.1
+## Date of fit: Wed Jul 18 15:16:22 2018
+## Date of summary: Wed Jul 18 15:16:22 2018
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 66 model solutions performed in 0.146 s
+## Fitted with method Port using 66 model solutions performed in 0.137 s
##
## Weighting: none
##

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