Merge branch 'master' into saemix

1 files changed, 31 insertions, 31 deletions

diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html
index ab9739bc..7074816c 100644
--- a/docs/articles/FOCUS_L.html
+++ b/docs/articles/FOCUS_L.html
@@ -31,7 +31,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">mkin</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.0.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.0.4</span>
       </span>
     </div>
 
@@ -94,13 +94,13 @@
 
       
 
-      </header><script src="FOCUS_L_files/header-attrs-2.6/header-attrs.js"></script><script src="FOCUS_L_files/accessible-code-block-0.0.1/empty-anchor.js"></script><div class="row">
+      </header><script src="FOCUS_L_files/header-attrs-2.7/header-attrs.js"></script><script src="FOCUS_L_files/accessible-code-block-0.0.1/empty-anchor.js"></script><div class="row">
   <div class="col-md-9 contents">
     <div class="page-header toc-ignore">
       <h1 data-toc-skip>Example evaluation of FOCUS Laboratory Data L1 to L3</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">Last change 17 November 2016 (rebuilt 2021-02-15)</h4>
+            <h4 class="date">Last change 17 November 2016 (rebuilt 2021-03-31)</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/master/vignettes/FOCUS_L.rmd"><code>vignettes/FOCUS_L.rmd</code></a></small>
       <div class="hidden name"><code>FOCUS_L.rmd</code></div>
@@ -126,10 +126,10 @@
 <div class="sourceCode" id="cb2"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span class="va">m.L1.SFO</span> <span class="op">&lt;-</span> <span class="fu"><a href="../reference/mkinfit.html">mkinfit</a></span><span class="op">(</span><span class="st">"SFO"</span>, <span class="va">FOCUS_2006_L1_mkin</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span>
 <span class="fu"><a href="https://rdrr.io/r/base/summary.html">summary</a></span><span class="op">(</span><span class="va">m.L1.SFO</span><span class="op">)</span></code></pre></div>
-<pre><code>## mkin version used for fitting:    1.0.3 
-## R version used for fitting:       4.0.3 
-## Date of fit:     Mon Feb 15 17:50:30 2021 
-## Date of summary: Mon Feb 15 17:50:30 2021 
+<pre><code>## mkin version used for fitting:    1.0.4 
+## R version used for fitting:       4.0.4 
+## Date of fit:     Wed Mar 31 19:18:31 2021 
+## Date of summary: Wed Mar 31 19:18:31 2021 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent * parent
@@ -232,10 +232,10 @@
 <pre><code>## Warning in sqrt(1/diag(V)): NaNs produced</code></pre>
 <pre><code>## Warning in cov2cor(ans$covar): diag(.) had 0 or NA entries; non-finite result is
 ## doubtful</code></pre>
-<pre><code>## mkin version used for fitting:    1.0.3 
-## R version used for fitting:       4.0.3 
-## Date of fit:     Mon Feb 15 17:50:31 2021 
-## Date of summary: Mon Feb 15 17:50:31 2021 
+<pre><code>## mkin version used for fitting:    1.0.4 
+## R version used for fitting:       4.0.4 
+## Date of fit:     Wed Mar 31 19:18:32 2021 
+## Date of summary: Wed Mar 31 19:18:32 2021 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
@@ -344,10 +344,10 @@
 <p><img src="FOCUS_L_files/figure-html/unnamed-chunk-9-1.png" width="672"></p>
 <div class="sourceCode" id="cb17"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span class="fu"><a href="https://rdrr.io/r/base/summary.html">summary</a></span><span class="op">(</span><span class="va">m.L2.FOMC</span>, data <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></code></pre></div>
-<pre><code>## mkin version used for fitting:    1.0.3 
-## R version used for fitting:       4.0.3 
-## Date of fit:     Mon Feb 15 17:50:31 2021 
-## Date of summary: Mon Feb 15 17:50:31 2021 
+<pre><code>## mkin version used for fitting:    1.0.4 
+## R version used for fitting:       4.0.4 
+## Date of fit:     Wed Mar 31 19:18:32 2021 
+## Date of summary: Wed Mar 31 19:18:32 2021 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
@@ -425,10 +425,10 @@
 <p><img src="FOCUS_L_files/figure-html/unnamed-chunk-10-1.png" width="672"></p>
 <div class="sourceCode" id="cb20"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span class="fu"><a href="https://rdrr.io/r/base/summary.html">summary</a></span><span class="op">(</span><span class="va">m.L2.DFOP</span>, data <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></code></pre></div>
-<pre><code>## mkin version used for fitting:    1.0.3 
-## R version used for fitting:       4.0.3 
-## Date of fit:     Mon Feb 15 17:50:32 2021 
-## Date of summary: Mon Feb 15 17:50:32 2021 
+<pre><code>## mkin version used for fitting:    1.0.4 
+## R version used for fitting:       4.0.4 
+## Date of fit:     Wed Mar 31 19:18:33 2021 
+## Date of summary: Wed Mar 31 19:18:33 2021 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -531,10 +531,10 @@
 <p>We can extract the summary and plot for <em>e.g.</em> the DFOP fit, using square brackets for indexing which will result in the use of the summary and plot functions working on mkinfit objects.</p>
 <div class="sourceCode" id="cb24"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span class="fu"><a href="https://rdrr.io/r/base/summary.html">summary</a></span><span class="op">(</span><span class="va">mm.L3</span><span class="op">[[</span><span class="st">"DFOP"</span>, <span class="fl">1</span><span class="op">]</span><span class="op">]</span><span class="op">)</span></code></pre></div>
-<pre><code>## mkin version used for fitting:    1.0.3 
-## R version used for fitting:       4.0.3 
-## Date of fit:     Mon Feb 15 17:50:32 2021 
-## Date of summary: Mon Feb 15 17:50:32 2021 
+<pre><code>## mkin version used for fitting:    1.0.4 
+## R version used for fitting:       4.0.4 
+## Date of fit:     Wed Mar 31 19:18:33 2021 
+## Date of summary: Wed Mar 31 19:18:33 2021 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -644,10 +644,10 @@
 <p>The <span class="math inline">\(\chi^2\)</span> error level of 3.3% as well as the plot suggest that the SFO model fits very well. The error level at which the <span class="math inline">\(\chi^2\)</span> test passes is slightly lower for the FOMC model. However, the difference appears negligible.</p>
 <div class="sourceCode" id="cb29"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span class="fu"><a href="https://rdrr.io/r/base/summary.html">summary</a></span><span class="op">(</span><span class="va">mm.L4</span><span class="op">[[</span><span class="st">"SFO"</span>, <span class="fl">1</span><span class="op">]</span><span class="op">]</span>, data <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></code></pre></div>
-<pre><code>## mkin version used for fitting:    1.0.3 
-## R version used for fitting:       4.0.3 
-## Date of fit:     Mon Feb 15 17:50:33 2021 
-## Date of summary: Mon Feb 15 17:50:33 2021 
+<pre><code>## mkin version used for fitting:    1.0.4 
+## R version used for fitting:       4.0.4 
+## Date of fit:     Wed Mar 31 19:18:34 2021 
+## Date of summary: Wed Mar 31 19:18:34 2021 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent * parent
@@ -709,10 +709,10 @@
 ## parent  106  352</code></pre>
 <div class="sourceCode" id="cb31"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span class="fu"><a href="https://rdrr.io/r/base/summary.html">summary</a></span><span class="op">(</span><span class="va">mm.L4</span><span class="op">[[</span><span class="st">"FOMC"</span>, <span class="fl">1</span><span class="op">]</span><span class="op">]</span>, data <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></code></pre></div>
-<pre><code>## mkin version used for fitting:    1.0.3 
-## R version used for fitting:       4.0.3 
-## Date of fit:     Mon Feb 15 17:50:33 2021 
-## Date of summary: Mon Feb 15 17:50:33 2021 
+<pre><code>## mkin version used for fitting:    1.0.4 
+## R version used for fitting:       4.0.4 
+## Date of fit:     Wed Mar 31 19:18:34 2021 
+## Date of summary: Wed Mar 31 19:18:34 2021 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent