diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2016-10-06 09:40:35 +0200 | 
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2016-10-06 09:40:35 +0200 | 
| commit | 7c62da1269e8910a210ba1917d4dc62d186d5606 (patch) | |
| tree | 57da1e788f84fe95352ff66d22a9da56dc86f9c3 /docs/articles/compiled_models.html | |
| parent | 38f9e15f0c972c1516ae737a2bca8d7789581bbd (diff) | |
Static documentation rebuilt by pkgdown::build_site()
Diffstat (limited to 'docs/articles/compiled_models.html')
| -rw-r--r-- | docs/articles/compiled_models.html | 28 | 
1 files changed, 14 insertions, 14 deletions
| diff --git a/docs/articles/compiled_models.html b/docs/articles/compiled_models.html index 1eeb78c6..d2e1d87d 100644 --- a/docs/articles/compiled_models.html +++ b/docs/articles/compiled_models.html @@ -73,21 +73,21 @@ mb<span class="fl">.1</span> <-<span class="st"> </span><span class="kw">micr  <span class="kw">print</span>(mb<span class="fl">.1</span>)</code></pre></div>  <pre><code>## Unit: milliseconds  ##                   expr       min        lq      mean    median        uq -##  deSolve, not compiled 6407.0333 6420.1971 6434.6510 6433.3609 6448.4598 -##       Eigenvalue based  887.4338  891.8401  906.9270  896.2463  916.6735 -##      deSolve, compiled  720.2433  727.8793  733.2019  735.5152  739.6812 +##  deSolve, not compiled 6365.2773 6407.1609 6467.4083 6449.0446 6518.4738 +##       Eigenvalue based  872.0339  912.6754  926.7178  953.3169  954.0597 +##      deSolve, compiled  730.1252  740.7149  751.8881  751.3045  762.7695  ##        max neval cld -##  6463.5587     3   c -##   937.1007     3  b  -##   743.8472     3 a</code></pre> +##  6587.9031     3   b +##   954.8026     3  a  +##   774.2345     3  a</code></pre>  <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">autoplot</span>(mb<span class="fl">.1</span>)</code></pre></div>  <p><img src="compiled_models_files/figure-html/benchmark_SFO_SFO-1.png" width="672"></p> -<p>We see that using the compiled model is by a factor of 8.7 faster than using the R version with the default ode solver, and it is even faster than the Eigenvalue based solution implemented in R which does not need iterative solution of the ODEs:</p> +<p>We see that using the compiled model is by a factor of 8.6 faster than using the R version with the default ode solver, and it is even faster than the Eigenvalue based solution implemented in R which does not need iterative solution of the ODEs:</p>  <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">rownames</span>(smb<span class="fl">.1</span>) <-<span class="st"> </span>smb<span class="fl">.1</span>$expr  smb<span class="fl">.1</span>[<span class="st">"median"</span>]/smb<span class="fl">.1</span>[<span class="st">"deSolve, compiled"</span>, <span class="st">"median"</span>]</code></pre></div>  <pre><code>##                         median -## deSolve, not compiled 8.746741 -## Eigenvalue based      1.218529 +## deSolve, not compiled 8.583796 +## Eigenvalue based      1.268882  ## deSolve, compiled     1.000000</code></pre>  </div>  <div id="benchmark-for-a-model-that-can-not-be-solved-with-eigenvalues" class="section level2"> @@ -108,12 +108,12 @@ smb<span class="fl">.1</span>[<span class="st">"median"</span>]/smb<span class="  <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">smb<span class="fl">.2</span> <-<span class="st"> </span><span class="kw">summary</span>(mb<span class="fl">.2</span>)  <span class="kw">print</span>(mb<span class="fl">.2</span>)</code></pre></div>  <pre><code>## Unit: seconds -##                   expr       min       lq      mean    median        uq -##  deSolve, not compiled 13.501761 13.52142 13.697021 13.541086 13.794651 -##      deSolve, compiled  1.359921  1.35996  1.366796  1.359999  1.370233 +##                   expr       min        lq     mean    median        uq +##  deSolve, not compiled 13.464194 13.498471 13.52712 13.532748 13.558577 +##      deSolve, compiled  1.328628  1.342168  1.35224  1.355707  1.364046  ##        max neval cld -##  14.048217     3   b -##   1.380468     3  a</code></pre> +##  13.584407     3   b +##   1.372385     3  a</code></pre>  <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">smb<span class="fl">.2</span>[<span class="st">"median"</span>]/smb<span class="fl">.2</span>[<span class="st">"deSolve, compiled"</span>, <span class="st">"median"</span>]</code></pre></div>  <pre><code>##   median  ## 1     NA | 
