Move coverage to pkgdown docs

The coverage report is neither successful on Travis nor in the github workflow set up with the usethis package. Therefore the code coverage report is generated locally and linked into the pkgdown docs.
author: Johannes Ranke <johannes.ranke@jrwb.de> 2024-07-29 08:06:08 +0200
committer: Johannes Ranke <johannes.ranke@jrwb.de> 2024-07-29 08:06:08 +0200
commit: bad2f70c18cd9f57c0d382914327613bcfc9298f (patch)
tree: 90cb488bf72c07ce4773c8a644fd9f3d903687c1 /docs/articles/index.html
parent: db43ba615c9084963f743df86512bd92ac88c8af (diff)
1 files changed, 58 insertions, 71 deletions
diff --git a/docs/articles/index.html b/docs/articles/index.html
index c6a8604e..0d62e494 100644
--- a/docs/articles/index.html
+++ b/docs/articles/index.html
@@ -1,87 +1,68 @@
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-    <h6 class="dropdown-header" data-toc-skip>Example evaluations with (generalised) nonlinear least squares</h6>
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-    <a class="dropdown-item" href="../articles/prebuilt/2022_dmta_parent.html">Testing hierarchical parent degradation kinetics with residue data on dimethenamid and dimethenamid-P</a>
-    <a class="dropdown-item" href="../articles/prebuilt/2022_dmta_pathway.html">Testing hierarchical pathway kinetics with residue data on dimethenamid and dimethenamid-P</a>
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+  <ul class="dropdown-menu" aria-labelledby="dropdown-articles"><li><a class="dropdown-item" href="../articles/mkin.html">Introduction to mkin</a></li>
+    <li><hr class="dropdown-divider"></li>
+    <li><h6 class="dropdown-header" data-toc-skip>Example evaluations with (generalised) nonlinear least squares</h6></li>
+    <li><a class="dropdown-item" href="../articles/FOCUS_D.html">Example evaluation of FOCUS Example Dataset D</a></li>
+    <li><a class="dropdown-item" href="../articles/FOCUS_L.html">Example evaluation of FOCUS Laboratory Data L1 to L3</a></li>
+    <li><a class="dropdown-item" href="../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a></li>
+    <li><hr class="dropdown-divider"></li>
+    <li><h6 class="dropdown-header" data-toc-skip>Example evaluations with hierarchical models (nonlinear mixed-effects models)</h6></li>
+    <li><a class="dropdown-item" href="../articles/prebuilt/2022_dmta_parent.html">Testing hierarchical parent degradation kinetics with residue data on dimethenamid and dimethenamid-P</a></li>
+    <li><a class="dropdown-item" href="../articles/prebuilt/2022_dmta_pathway.html">Testing hierarchical pathway kinetics with residue data on dimethenamid and dimethenamid-P</a></li>
+    <li><a class="dropdown-item" href="../articles/prebuilt/2023_mesotrione_parent.html">Testing covariate modelling in hierarchical parent degradation kinetics with residue data on mesotrione</a></li>
+    <li><a class="dropdown-item" href="../articles/prebuilt/2022_cyan_pathway.html">Testing hierarchical pathway kinetics with residue data on cyantraniliprole</a></li>
+    <li><a class="dropdown-item" href="../articles/web_only/dimethenamid_2018.html">Comparison of saemix and nlme evaluations of dimethenamid data from 2018</a></li>
+    <li><a class="dropdown-item" href="../articles/web_only/multistart.html">Short demo of the multistart method</a></li>
+    <li><hr class="dropdown-divider"></li>
+    <li><h6 class="dropdown-header" data-toc-skip>Performance</h6></li>
+    <li><a class="dropdown-item" href="../articles/web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a></li>
+    <li><a class="dropdown-item" href="../articles/web_only/benchmarks.html">Benchmark timings for mkin</a></li>
+    <li><a class="dropdown-item" href="../articles/web_only/saem_benchmarks.html">Benchmark timings for saem.mmkin</a></li>
+    <li><hr class="dropdown-divider"></li>
+    <li><h6 class="dropdown-header" data-toc-skip>Miscellaneous</h6></li>
+    <li><a class="dropdown-item" href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a></li>
+    <li><a class="dropdown-item" href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a></li>
+  </ul></li>
+<li class="nav-item"><a class="nav-link" href="../coverage/coverage.html">Test coverage</a></li>
+<li class="nav-item"><a class="nav-link" href="../news/index.html">News</a></li>
+      </ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
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-      <img src="" class="logo" alt=""><h1>Articles</h1>
+
+      <h1>Articles</h1>
     </div>
 
     <div class="section ">
       <h3>All vignettes</h3>
-      <p class="section-desc"></p>
+      <div class="section-desc"></div>
 
-      <dl><dt><a href="FOCUS_D.html">Example evaluation of FOCUS Example Dataset D</a></dt>
-        <dd>
-        </dd><dt><a href="FOCUS_L.html">Example evaluation of FOCUS Laboratory Data L1 to L3</a></dt>
-        <dd>
-        </dd><dt><a href="mkin.html">Short introduction to mkin</a></dt>
-        <dd>
-        </dd><dt><a href="prebuilt/2022_cyan_pathway.html">Testing hierarchical pathway kinetics with residue data on cyantraniliprole</a></dt>
+      <dl><dt><a href="prebuilt/2022_cyan_pathway.html">Testing hierarchical pathway kinetics with residue data on cyantraniliprole</a></dt>
         <dd>
         </dd><dt><a href="prebuilt/2022_dmta_parent.html">Testing hierarchical parent degradation kinetics with residue data on dimethenamid and dimethenamid-P</a></dt>
         <dd>
@@ -89,39 +70,45 @@
         <dd>
         </dd><dt><a href="prebuilt/2023_mesotrione_parent.html">Testing covariate modelling in hierarchical parent degradation kinetics with residue data on mesotrione</a></dt>
         <dd>
-        </dd><dt><a href="twa.html">Calculation of time weighted average concentrations with mkin</a></dt>
-        <dd>
-        </dd><dt><a href="web_only/FOCUS_Z.html">Example evaluation of FOCUS dataset Z</a></dt>
-        <dd>
-        </dd><dt><a href="web_only/NAFTA_examples.html">Evaluation of example datasets from Attachment 1 to the US EPA SOP for the NAFTA guidance</a></dt>
-        <dd>
         </dd><dt><a href="web_only/benchmarks.html">Benchmark timings for mkin</a></dt>
         <dd>
         </dd><dt><a href="web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a></dt>
         <dd>
         </dd><dt><a href="web_only/dimethenamid_2018.html">Example evaluations of the dimethenamid data from 2018</a></dt>
         <dd>
+        </dd><dt><a href="FOCUS_D.html">Example evaluation of FOCUS Example Dataset D</a></dt>
+        <dd>
+        </dd><dt><a href="FOCUS_L.html">Example evaluation of FOCUS Laboratory Data L1 to L3</a></dt>
+        <dd>
+        </dd><dt><a href="web_only/FOCUS_Z.html">Example evaluation of FOCUS dataset Z</a></dt>
+        <dd>
+        </dd><dt><a href="mkin.html">Short introduction to mkin</a></dt>
+        <dd>
         </dd><dt><a href="web_only/multistart.html">Short demo of the multistart method</a></dt>
         <dd>
+        </dd><dt><a href="web_only/NAFTA_examples.html">Evaluation of example datasets from Attachment 1 to the US EPA SOP for the NAFTA guidance</a></dt>
+        <dd>
         </dd><dt><a href="web_only/saem_benchmarks.html">Benchmark timings for saem.mmkin</a></dt>
         <dd>
+        </dd><dt><a href="twa.html">Calculation of time weighted average concentrations with mkin</a></dt>
+        <dd>
       </dd></dl></div>
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author	Johannes Ranke <johannes.ranke@jrwb.de>	2024-07-29 08:06:08 +0200
committer	Johannes Ranke <johannes.ranke@jrwb.de>	2024-07-29 08:06:08 +0200
commit	bad2f70c18cd9f57c0d382914327613bcfc9298f (patch)
tree	90cb488bf72c07ce4773c8a644fd9f3d903687c1 /docs/articles/index.html
parent	db43ba615c9084963f743df86512bd92ac88c8af (diff)