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authorJohannes Ranke <jranke@uni-bremen.de>2017-11-16 17:13:35 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2017-11-16 17:13:35 +0100
commit1511ed0a775e15ec2158e22d08a4da00cdd834aa (patch)
treef75cf31b069e1c2f7e101fb323d8b2f1ef1372c8 /docs/articles/mkin.html
parent5a4653a14f545833ee461edb26ac7fecc2e22f60 (diff)
Use html_vignette for FOCUS_D vignette, fix addressv0.9.46.3
Static documentation articles rebuilt by pkgdown::build_articles()
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@@ -62,14 +62,7 @@
<a href="../news/index.html">News</a>
</li>
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-<ul class="nav navbar-nav navbar-right">
-<li>
- <a href="http://github.com/jranke/mkin">
- <span class="fa fa-github fa-lg"></span>
-
- </a>
-</li>
- </ul>
+<ul class="nav navbar-nav navbar-right"></ul>
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<!--/.nav-collapse -->
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@@ -84,13 +77,13 @@
<h1>Introduction to mkin</h1>
<h4 class="author">Johannes Ranke</h4>
- <h4 class="date">2017-09-14</h4>
+ <h4 class="date">2017-11-16</h4>
</div>
<div class="contents">
-<p><a href="http://www.jrwb.de">Wissenschaftlicher Berater, Kronacher Str. 8, 79639 Grenzach-Wyhlen, Germany</a><br><a href="http://chem.uft.uni-bremen.de/ranke">Privatdozent at the University of Bremen</a></p>
+<p><a href="http://www.jrwb.de">Wissenschaftlicher Berater, Kronacher Str. 12, 79639 Grenzach-Wyhlen, Germany</a><br><a href="http://chem.uft.uni-bremen.de/ranke">Privatdozent at the University of Bremen</a></p>
<div id="abstract" class="section level1">
<h1 class="hasAnchor">
<a href="#abstract" class="anchor"></a>Abstract</h1>
@@ -147,7 +140,7 @@ f_SFO_SFO_SFO &lt;-<span class="st"> </span><span class="kw"><a href="../referen
<p>Soon after the publication of <code>mkin</code>, two derived tools were published, namely KinGUII (available from Bayer Crop Science) and CAKE (commissioned to Tessella by Syngenta), which added a graphical user interface (GUI), and added fitting by iteratively reweighted least squares (IRLS) and characterisation of likely parameter distributions by Markov Chain Monte Carlo (MCMC) sampling.</p>
<p>CAKE focuses on a smooth use experience, sacrificing some flexibility in the model definition, originally allowing only two primary metabolites in parallel. The current version 3.2 of CAKE release in March 2016 uses a basic scheme for up to six metabolites in a flexible arrangement, but does not support back-reactions (non-instantaneous equilibria) or biphasic kinetics for metabolites.</p>
<p>KinGUI offers an even more flexible widget for specifying complex kinetic models. Back-reactions (non-instanteneous equilibria) were supported early on, but until 2014, only simple first-order models could be specified for transformation products. Starting with KinGUII version 2.1, biphasic modelling of metabolites was also available in KinGUII.</p>
-<p>A further graphical user interface (GUI) that has recently been brought to a decent degree of maturity is the browser based GUI named <code>gmkin</code>. Please see its <a href="http://kinfit.r-forge.r-project.org/gmkin_static">documentation page</a> and <a href="http://kinfit.r-forge.r-project.org/gmkin_static/vignettes/gmkin_manual.html">manual</a> for further information.</p>
+<p>A further graphical user interface (GUI) that has recently been brought to a decent degree of maturity is the browser based GUI named <code>gmkin</code>. Please see its <a href="https://pkgdown.jrwb.de/gmkin">documentation page</a> and <a href="https://pkgdown.jrwb.de/gmkin/articles/gmkin_manual.html">manual</a> for further information.</p>
</div>
<div id="recent-developments" class="section level2">
<h2 class="hasAnchor">

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