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| author | Johannes Ranke <jranke@uni-bremen.de> | 2020-05-14 17:10:59 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2020-05-14 17:10:59 +0200 |
| commit | b6e278759127dab5bb78bc3016926a66e8a9758f (patch) | |
| tree | 0dc20ce2fa58805b736d77035dbff40667272fff /docs/articles/web_only/compiled_models.html | |
| parent | 218a9c55bd80fb708b15fa7196422f759bfe4b27 (diff) | |
Test markdown link, article update due to .rmd extension
Diffstat (limited to 'docs/articles/web_only/compiled_models.html')
| -rw-r--r-- | docs/articles/web_only/compiled_models.html | 23 |
1 files changed, 13 insertions, 10 deletions
diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html index 85134720..837b288b 100644 --- a/docs/articles/web_only/compiled_models.html +++ b/docs/articles/web_only/compiled_models.html @@ -68,6 +68,9 @@ <li> <a href="../../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a> </li> + <li> + <a href="../../articles/web_only/benchmarks.html">Some benchmark timings</a> + </li> </ul> </li> <li> @@ -97,10 +100,10 @@ <h1 data-toc-skip>Performance benefit by using compiled model definitions in mkin</h1> <h4 class="author">Johannes Ranke</h4> - <h4 class="date">2020-05-12</h4> + <h4 class="date">2020-05-14</h4> - <small class="dont-index">Source: <a href="http://github.com/jranke/mkin/blob/master/vignettes/web_only/compiled_models.Rmd"><code>vignettes/web_only/compiled_models.Rmd</code></a></small> - <div class="hidden name"><code>compiled_models.Rmd</code></div> + <small class="dont-index">Source: <a href="http://github.com/jranke/mkin/blob/master/vignettes/web_only/compiled_models.rmd"><code>vignettes/web_only/compiled_models.rmd</code></a></small> + <div class="hidden name"><code>compiled_models.rmd</code></div> </div> @@ -149,10 +152,10 @@ <span class="fu"><a href="https://rdrr.io/r/base/print.html">print</a></span>(<span class="st">"R package rbenchmark is not available"</span>) }</pre></body></html></div> <pre><code>## test replications relative elapsed -## 4 analytical 1 1.000 0.190 -## 3 deSolve, compiled 1 1.774 0.337 -## 2 Eigenvalue based 1 2.105 0.400 -## 1 deSolve, not compiled 1 42.763 8.125</code></pre> +## 4 analytical 1 1.000 0.191 +## 3 deSolve, compiled 1 1.801 0.344 +## 2 Eigenvalue based 1 2.105 0.402 +## 1 deSolve, not compiled 1 42.864 8.187</code></pre> <p>We see that using the compiled model is by more than a factor of 10 faster than using deSolve without compiled code.</p> </div> <div id="model-without-analytical-solution" class="section level2"> @@ -178,9 +181,9 @@ }</pre></body></html></div> <pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre> <pre><code>## test replications relative elapsed -## 2 deSolve, compiled 1 1.000 0.476 -## 1 deSolve, not compiled 1 30.103 14.329</code></pre> -<p>Here we get a performance benefit of a factor of 30 using the version of the differential equation model compiled from C code!</p> +## 2 deSolve, compiled 1 1.000 0.466 +## 1 deSolve, not compiled 1 30.942 14.419</code></pre> +<p>Here we get a performance benefit of a factor of 31 using the version of the differential equation model compiled from C code!</p> <p>This vignette was built with mkin 0.9.50.2 on</p> <pre><code>## R version 4.0.0 (2020-04-24) ## Platform: x86_64-pc-linux-gnu (64-bit) |