Prepare release of v1.2.4v1.2.4

- Update DESCRIPTION
- Update Makefile to document how to use R-patched
- Remove markup from two URLs to avoid CRAN NOTE
- Switch two vignettes from html_document to html_vignette to save space
  in the docs directory, also avoiding a CRAN NOTE
- Complete rebuild of pkgdown docs for release

1 files changed, 11 insertions, 11 deletions

diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html
index a411dad1..3c53b40a 100644
--- a/docs/articles/web_only/compiled_models.html
+++ b/docs/articles/web_only/compiled_models.html
@@ -33,7 +33,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../../index.html">mkin</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.2.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.2.4</span>
       </span>
     </div>
 
@@ -134,7 +134,7 @@ definitions in mkin</h1>
                         <h4 data-toc-skip class="author">Johannes
 Ranke</h4>
             
-            <h4 data-toc-skip class="date">2023-04-20</h4>
+            <h4 data-toc-skip class="date">2023-05-19</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/web_only/compiled_models.rmd" class="external-link"><code>vignettes/web_only/compiled_models.rmd</code></a></small>
       <div class="hidden name"><code>compiled_models.rmd</code></div>
@@ -213,10 +213,10 @@ solution is also implemented, which is included in the tests below.</p>
 <span>  <span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="st">"R package rbenchmark is not available"</span><span class="op">)</span></span>
 <span><span class="op">}</span></span></code></pre></div>
 <pre><code><span><span class="co">##                    test replications relative elapsed</span></span>
-<span><span class="co">## 4            analytical            1    1.000   0.103</span></span>
-<span><span class="co">## 3     deSolve, compiled            1    1.291   0.133</span></span>
-<span><span class="co">## 2      Eigenvalue based            1    1.718   0.177</span></span>
-<span><span class="co">## 1 deSolve, not compiled            1   22.136   2.280</span></span></code></pre>
+<span><span class="co">## 4            analytical            1    1.000   0.099</span></span>
+<span><span class="co">## 3     deSolve, compiled            1    1.303   0.129</span></span>
+<span><span class="co">## 2      Eigenvalue based            1    1.697   0.168</span></span>
+<span><span class="co">## 1 deSolve, not compiled            1   21.475   2.126</span></span></code></pre>
 <p>We see that using the compiled model is by more than a factor of 10
 faster than using deSolve without compiled code.</p>
 </div>
@@ -247,12 +247,12 @@ compiled code is available.</p>
 <span><span class="op">}</span></span></code></pre></div>
 <pre><code><span><span class="co">## Temporary DLL for differentials generated and loaded</span></span></code></pre>
 <pre><code><span><span class="co">##                    test replications relative elapsed</span></span>
-<span><span class="co">## 2     deSolve, compiled            1    1.000   0.171</span></span>
-<span><span class="co">## 1 deSolve, not compiled            1   24.199   4.138</span></span></code></pre>
-<p>Here we get a performance benefit of a factor of 24 using the version
+<span><span class="co">## 2     deSolve, compiled            1    1.000   0.165</span></span>
+<span><span class="co">## 1 deSolve, not compiled            1   22.673   3.741</span></span></code></pre>
+<p>Here we get a performance benefit of a factor of 23 using the version
 of the differential equation model compiled from C code!</p>
-<p>This vignette was built with mkin 1.2.3 on</p>
-<pre><code><span><span class="co">## R version 4.2.3 (2023-03-15)</span></span>
+<p>This vignette was built with mkin 1.2.4 on</p>
+<pre><code><span><span class="co">## R version 4.3.0 Patched (2023-05-18 r84448)</span></span>
 <span><span class="co">## Platform: x86_64-pc-linux-gnu (64-bit)</span></span>
 <span><span class="co">## Running under: Debian GNU/Linux 12 (bookworm)</span></span></code></pre>
 <pre><code><span><span class="co">## CPU model: AMD Ryzen 9 7950X 16-Core Processor</span></span></code></pre>