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authorJohannes Ranke <jranke@uni-bremen.de>2021-02-15 17:05:19 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2021-02-15 17:05:19 +0100
commit11c7f26dd6c532d977d9875f3c16952c7bba37ca (patch)
tree03393f3e63f1db688166e82fff7a8d16bb239154 /docs/articles/web_only/compiled_models.html
parentc4f327e62f19c0a3fc77a538f7cf0c2c619019d8 (diff)
parenta9427a09abdf7ce9aaeae7c7190f90c8f2e5ef52 (diff)
Merge branch 'master' into saemix
Diffstat (limited to 'docs/articles/web_only/compiled_models.html')
-rw-r--r--docs/articles/web_only/compiled_models.html22
1 files changed, 11 insertions, 11 deletions
diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html
index e45655b6..ce8d8481 100644
--- a/docs/articles/web_only/compiled_models.html
+++ b/docs/articles/web_only/compiled_models.html
@@ -31,7 +31,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../../index.html">mkin</a>
- <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.0.0</span>
+ <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.0.3</span>
</span>
</div>
@@ -94,13 +94,13 @@
- </header><div class="row">
+ </header><script src="compiled_models_files/header-attrs-2.6/header-attrs.js"></script><script src="compiled_models_files/accessible-code-block-0.0.1/empty-anchor.js"></script><div class="row">
<div class="col-md-9 contents">
<div class="page-header toc-ignore">
<h1 data-toc-skip>Performance benefit by using compiled model definitions in mkin</h1>
<h4 class="author">Johannes Ranke</h4>
- <h4 class="date">2021-02-03</h4>
+ <h4 class="date">2021-02-15</h4>
<small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/master/vignettes/web_only/compiled_models.rmd"><code>vignettes/web_only/compiled_models.rmd</code></a></small>
<div class="hidden name"><code>compiled_models.rmd</code></div>
@@ -159,9 +159,9 @@
<span class="op">}</span></code></pre></div>
<pre><code>## test replications relative elapsed
## 4 analytical 1 1.000 0.181
-## 3 deSolve, compiled 1 1.818 0.329
-## 2 Eigenvalue based 1 2.061 0.373
-## 1 deSolve, not compiled 1 43.923 7.950</code></pre>
+## 3 deSolve, compiled 1 1.812 0.328
+## 2 Eigenvalue based 1 2.088 0.378
+## 1 deSolve, not compiled 1 45.923 8.312</code></pre>
<p>We see that using the compiled model is by more than a factor of 10 faster than using deSolve without compiled code.</p>
</div>
<div id="model-without-analytical-solution" class="section level2">
@@ -188,13 +188,13 @@
<span class="op">}</span></code></pre></div>
<pre><code>## Temporary DLL for differentials generated and loaded</code></pre>
<pre><code>## test replications relative elapsed
-## 2 deSolve, compiled 1 1.000 0.474
-## 1 deSolve, not compiled 1 30.179 14.305</code></pre>
-<p>Here we get a performance benefit of a factor of 30 using the version of the differential equation model compiled from C code!</p>
-<p>This vignette was built with mkin 1.0.0 on</p>
+## 2 deSolve, compiled 1 1.000 0.486
+## 1 deSolve, not compiled 1 31.597 15.356</code></pre>
+<p>Here we get a performance benefit of a factor of 32 using the version of the differential equation model compiled from C code!</p>
+<p>This vignette was built with mkin 1.0.3 on</p>
<pre><code>## R version 4.0.3 (2020-10-10)
## Platform: x86_64-pc-linux-gnu (64-bit)
-## Running under: Debian GNU/Linux 10 (buster)</code></pre>
+## Running under: Debian GNU/Linux bullseye/sid</code></pre>
<pre><code>## CPU model: AMD Ryzen 7 1700 Eight-Core Processor</code></pre>
</div>
</div>

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