Test markdown link, article update due to .rmd extension

4 files changed, 37 insertions, 28 deletions

diff --git a/docs/articles/web_only/FOCUS_Z.html b/docs/articles/web_only/FOCUS_Z.html
index 0c34d77d..3427afb6 100644
--- a/docs/articles/web_only/FOCUS_Z.html
+++ b/docs/articles/web_only/FOCUS_Z.html
@@ -68,6 +68,9 @@
     <li>
       <a href="../../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
     </li>
+    <li>
+      <a href="../../articles/web_only/benchmarks.html">Some benchmark timings</a>
+    </li>
   </ul>
 </li>
 <li>
@@ -97,10 +100,10 @@
       <h1 data-toc-skip>Example evaluation of FOCUS dataset Z</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2020-05-12</h4>
+            <h4 class="date">2020-05-14</h4>
       
-      <small class="dont-index">Source: <a href="http://github.com/jranke/mkin/blob/master/vignettes/web_only/FOCUS_Z.Rmd"><code>vignettes/web_only/FOCUS_Z.Rmd</code></a></small>
-      <div class="hidden name"><code>FOCUS_Z.Rmd</code></div>
+      <small class="dont-index">Source: <a href="http://github.com/jranke/mkin/blob/master/vignettes/web_only/FOCUS_Z.rmd"><code>vignettes/web_only/FOCUS_Z.rmd</code></a></small>
+      <div class="hidden name"><code>FOCUS_Z.rmd</code></div>
 
     </div>
 
diff --git a/docs/articles/web_only/NAFTA_examples.html b/docs/articles/web_only/NAFTA_examples.html
index 411341b8..46cb7aa5 100644
--- a/docs/articles/web_only/NAFTA_examples.html
+++ b/docs/articles/web_only/NAFTA_examples.html
@@ -68,6 +68,9 @@
     <li>
       <a href="../../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
     </li>
+    <li>
+      <a href="../../articles/web_only/benchmarks.html">Some benchmark timings</a>
+    </li>
   </ul>
 </li>
 <li>
@@ -97,10 +100,10 @@
       <h1 data-toc-skip>Evaluation of example datasets from Attachment 1 to the US EPA SOP for the NAFTA guidance</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2020-05-12</h4>
+            <h4 class="date">2020-05-14</h4>
       
-      <small class="dont-index">Source: <a href="http://github.com/jranke/mkin/blob/master/vignettes/web_only/NAFTA_examples.Rmd"><code>vignettes/web_only/NAFTA_examples.Rmd</code></a></small>
-      <div class="hidden name"><code>NAFTA_examples.Rmd</code></div>
+      <small class="dont-index">Source: <a href="http://github.com/jranke/mkin/blob/master/vignettes/web_only/NAFTA_examples.rmd"><code>vignettes/web_only/NAFTA_examples.rmd</code></a></small>
+      <div class="hidden name"><code>NAFTA_examples.rmd</code></div>
 
     </div>
 
diff --git a/docs/articles/web_only/benchmarks.html b/docs/articles/web_only/benchmarks.html
index 202ec25f..97e22303 100644
--- a/docs/articles/web_only/benchmarks.html
+++ b/docs/articles/web_only/benchmarks.html
@@ -100,7 +100,7 @@
       <h1 data-toc-skip>Benchmark timings for mkin</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2020-05-13</h4>
+            <h4 class="date">2020-05-14</h4>
       
       <small class="dont-index">Source: <a href="http://github.com/jranke/mkin/blob/master/vignettes/web_only/benchmarks.rmd"><code>vignettes/web_only/benchmarks.rmd</code></a></small>
       <div class="hidden name"><code>benchmarks.rmd</code></div>
@@ -210,8 +210,8 @@
 </tr>
 <tr class="even">
 <td align="left">0.9.50.2</td>
-<td align="right">1.704</td>
-<td align="right">3.909</td>
+<td align="right">1.714</td>
+<td align="right">3.971</td>
 </tr>
 </tbody>
 </table>
@@ -260,9 +260,9 @@
 </tr>
 <tr class="even">
 <td align="left">0.9.50.2</td>
-<td align="right">1.370</td>
-<td align="right">6.147</td>
-<td align="right">2.747</td>
+<td align="right">1.402</td>
+<td align="right">6.174</td>
+<td align="right">2.764</td>
 </tr>
 </tbody>
 </table>
@@ -329,12 +329,12 @@
 </tr>
 <tr class="even">
 <td align="left">0.9.50.2</td>
-<td align="right">0.761</td>
-<td align="right">1.213</td>
-<td align="right">1.287</td>
-<td align="right">2.886</td>
-<td align="right">2.054</td>
-<td align="right">2.984</td>
+<td align="right">0.777</td>
+<td align="right">1.236</td>
+<td align="right">1.332</td>
+<td align="right">2.872</td>
+<td align="right">2.069</td>
+<td align="right">2.987</td>
 </tr>
 </tbody>
 </table>
diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html
index 85134720..837b288b 100644
--- a/docs/articles/web_only/compiled_models.html
+++ b/docs/articles/web_only/compiled_models.html
@@ -68,6 +68,9 @@
     <li>
       <a href="../../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
     </li>
+    <li>
+      <a href="../../articles/web_only/benchmarks.html">Some benchmark timings</a>
+    </li>
   </ul>
 </li>
 <li>
@@ -97,10 +100,10 @@
       <h1 data-toc-skip>Performance benefit by using compiled model definitions in mkin</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2020-05-12</h4>
+            <h4 class="date">2020-05-14</h4>
       
-      <small class="dont-index">Source: <a href="http://github.com/jranke/mkin/blob/master/vignettes/web_only/compiled_models.Rmd"><code>vignettes/web_only/compiled_models.Rmd</code></a></small>
-      <div class="hidden name"><code>compiled_models.Rmd</code></div>
+      <small class="dont-index">Source: <a href="http://github.com/jranke/mkin/blob/master/vignettes/web_only/compiled_models.rmd"><code>vignettes/web_only/compiled_models.rmd</code></a></small>
+      <div class="hidden name"><code>compiled_models.rmd</code></div>
 
     </div>
 
@@ -149,10 +152,10 @@
   <span class="fu"><a href="https://rdrr.io/r/base/print.html">print</a></span>(<span class="st">"R package rbenchmark is not available"</span>)
 }</pre></body></html></div>
 <pre><code>##                    test replications relative elapsed
-## 4            analytical            1    1.000   0.190
-## 3     deSolve, compiled            1    1.774   0.337
-## 2      Eigenvalue based            1    2.105   0.400
-## 1 deSolve, not compiled            1   42.763   8.125</code></pre>
+## 4            analytical            1    1.000   0.191
+## 3     deSolve, compiled            1    1.801   0.344
+## 2      Eigenvalue based            1    2.105   0.402
+## 1 deSolve, not compiled            1   42.864   8.187</code></pre>
 <p>We see that using the compiled model is by more than a factor of 10 faster than using deSolve without compiled code.</p>
 </div>
 <div id="model-without-analytical-solution" class="section level2">
@@ -178,9 +181,9 @@
 }</pre></body></html></div>
 <pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre>
 <pre><code>##                    test replications relative elapsed
-## 2     deSolve, compiled            1    1.000   0.476
-## 1 deSolve, not compiled            1   30.103  14.329</code></pre>
-<p>Here we get a performance benefit of a factor of 30 using the version of the differential equation model compiled from C code!</p>
+## 2     deSolve, compiled            1    1.000   0.466
+## 1 deSolve, not compiled            1   30.942  14.419</code></pre>
+<p>Here we get a performance benefit of a factor of 31 using the version of the differential equation model compiled from C code!</p>
 <p>This vignette was built with mkin 0.9.50.2 on</p>
 <pre><code>## R version 4.0.0 (2020-04-24)
 ## Platform: x86_64-pc-linux-gnu (64-bit)