aboutsummaryrefslogtreecommitdiff
path: root/docs/articles
diff options
context:
space:
mode:
authorJohannes Ranke <jranke@uni-bremen.de>2018-09-18 10:14:40 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2018-09-18 10:14:40 +0200
commit39b6d8b8569801c2957b22d0973b5ad0c9405e7d (patch)
tree97d0580eec85d9ab4196338ec742ba407ccfa7f8 /docs/articles
parent9a793d0d39c8239ebcc76390f227596cef9b9be1 (diff)
Support maximum twa for HS, test, docs
Diffstat (limited to 'docs/articles')
-rw-r--r--docs/articles/FOCUS_D.html4
-rw-r--r--docs/articles/FOCUS_L.html46
-rw-r--r--docs/articles/index.html2
-rw-r--r--docs/articles/mkin.html4
-rw-r--r--docs/articles/twa.html4
-rw-r--r--docs/articles/web_only/FOCUS_Z.html4
-rw-r--r--docs/articles/web_only/compiled_models.html14
7 files changed, 39 insertions, 39 deletions
diff --git a/docs/articles/FOCUS_D.html b/docs/articles/FOCUS_D.html
index a90cb7fb..b44462aa 100644
--- a/docs/articles/FOCUS_D.html
+++ b/docs/articles/FOCUS_D.html
@@ -29,7 +29,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.5</span>
+ <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.6</span>
</span>
</div>
@@ -84,7 +84,7 @@
<h1>Example evaluation of FOCUS Example Dataset D</h1>
<h4 class="author">Johannes Ranke</h4>
- <h4 class="date">2018-09-14</h4>
+ <h4 class="date">2018-09-18</h4>
<div class="hidden name"><code>FOCUS_D.Rmd</code></div>
diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html
index 2a99a609..8ef55b81 100644
--- a/docs/articles/FOCUS_L.html
+++ b/docs/articles/FOCUS_L.html
@@ -29,7 +29,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.5</span>
+ <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.6</span>
</span>
</div>
@@ -84,7 +84,7 @@
<h1>Example evaluation of FOCUS Laboratory Data L1 to L3</h1>
<h4 class="author">Johannes Ranke</h4>
- <h4 class="date">2018-09-14</h4>
+ <h4 class="date">2018-09-18</h4>
<div class="hidden name"><code>FOCUS_L.Rmd</code></div>
@@ -110,15 +110,15 @@
<a class="sourceLine" id="cb2-2" data-line-number="2"><span class="kw">summary</span>(m.L1.SFO)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.5
## R version used for fitting: 3.5.1
-## Date of fit: Fri Sep 14 21:00:22 2018
-## Date of summary: Fri Sep 14 21:00:22 2018
+## Date of fit: Tue Sep 18 09:50:45 2018
+## Date of summary: Tue Sep 18 09:50:45 2018
##
## Equations:
## d_parent/dt = - k_parent_sink * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 37 model solutions performed in 0.087 s
+## Fitted with method Port using 37 model solutions performed in 0.081 s
##
## Weighting: none
##
@@ -201,15 +201,15 @@
<div class="sourceCode" id="cb7"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb7-1" data-line-number="1"><span class="kw">summary</span>(m.L1.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.5
## R version used for fitting: 3.5.1
-## Date of fit: Fri Sep 14 21:00:23 2018
-## Date of summary: Fri Sep 14 21:00:23 2018
+## Date of fit: Tue Sep 18 09:50:47 2018
+## Date of summary: Tue Sep 18 09:50:47 2018
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 611 model solutions performed in 1.352 s
+## Fitted with method Port using 611 model solutions performed in 1.294 s
##
## Weighting: none
##
@@ -296,15 +296,15 @@
<div class="sourceCode" id="cb12"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb12-1" data-line-number="1"><span class="kw">summary</span>(m.L2.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.5
## R version used for fitting: 3.5.1
-## Date of fit: Fri Sep 14 21:00:24 2018
-## Date of summary: Fri Sep 14 21:00:24 2018
+## Date of fit: Tue Sep 18 09:50:47 2018
+## Date of summary: Tue Sep 18 09:50:47 2018
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 81 model solutions performed in 0.175 s
+## Fitted with method Port using 81 model solutions performed in 0.166 s
##
## Weighting: none
##
@@ -367,8 +367,8 @@
<div class="sourceCode" id="cb15"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb15-1" data-line-number="1"><span class="kw">summary</span>(m.L2.DFOP, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.5
## R version used for fitting: 3.5.1
-## Date of fit: Fri Sep 14 21:00:25 2018
-## Date of summary: Fri Sep 14 21:00:25 2018
+## Date of fit: Tue Sep 18 09:50:48 2018
+## Date of summary: Tue Sep 18 09:50:48 2018
##
## Equations:
## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -377,7 +377,7 @@
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 336 model solutions performed in 0.758 s
+## Fitted with method Port using 336 model solutions performed in 0.714 s
##
## Weighting: none
##
@@ -459,8 +459,8 @@
<div class="sourceCode" id="cb21"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb21-1" data-line-number="1"><span class="kw">summary</span>(mm.L3[[<span class="st">"DFOP"</span>, <span class="dv">1</span>]])</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.5
## R version used for fitting: 3.5.1
-## Date of fit: Fri Sep 14 21:00:26 2018
-## Date of summary: Fri Sep 14 21:00:26 2018
+## Date of fit: Tue Sep 18 09:50:49 2018
+## Date of summary: Tue Sep 18 09:50:49 2018
##
## Equations:
## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -469,7 +469,7 @@
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 137 model solutions performed in 0.31 s
+## Fitted with method Port using 137 model solutions performed in 0.299 s
##
## Weighting: none
##
@@ -560,15 +560,15 @@
<div class="sourceCode" id="cb26"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb26-1" data-line-number="1"><span class="kw">summary</span>(mm.L4[[<span class="st">"SFO"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.5
## R version used for fitting: 3.5.1
-## Date of fit: Fri Sep 14 21:00:26 2018
-## Date of summary: Fri Sep 14 21:00:27 2018
+## Date of fit: Tue Sep 18 09:50:50 2018
+## Date of summary: Tue Sep 18 09:50:50 2018
##
## Equations:
## d_parent/dt = - k_parent_sink * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 46 model solutions performed in 0.102 s
+## Fitted with method Port using 46 model solutions performed in 0.093 s
##
## Weighting: none
##
@@ -620,15 +620,15 @@
<div class="sourceCode" id="cb28"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb28-1" data-line-number="1"><span class="kw">summary</span>(mm.L4[[<span class="st">"FOMC"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.5
## R version used for fitting: 3.5.1
-## Date of fit: Fri Sep 14 21:00:26 2018
-## Date of summary: Fri Sep 14 21:00:27 2018
+## Date of fit: Tue Sep 18 09:50:50 2018
+## Date of summary: Tue Sep 18 09:50:50 2018
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 66 model solutions performed in 0.151 s
+## Fitted with method Port using 66 model solutions performed in 0.138 s
##
## Weighting: none
##
diff --git a/docs/articles/index.html b/docs/articles/index.html
index ad0ab46e..c48dfec7 100644
--- a/docs/articles/index.html
+++ b/docs/articles/index.html
@@ -58,7 +58,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.5</span>
+ <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.6</span>
</span>
</div>
diff --git a/docs/articles/mkin.html b/docs/articles/mkin.html
index 3ae09165..e483043b 100644
--- a/docs/articles/mkin.html
+++ b/docs/articles/mkin.html
@@ -29,7 +29,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.5</span>
+ <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.6</span>
</span>
</div>
@@ -84,7 +84,7 @@
<h1>Introduction to mkin</h1>
<h4 class="author">Johannes Ranke</h4>
- <h4 class="date">2018-09-14</h4>
+ <h4 class="date">2018-09-18</h4>
<div class="hidden name"><code>mkin.Rmd</code></div>
diff --git a/docs/articles/twa.html b/docs/articles/twa.html
index 4d516ff1..d9249f9d 100644
--- a/docs/articles/twa.html
+++ b/docs/articles/twa.html
@@ -29,7 +29,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.5</span>
+ <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.6</span>
</span>
</div>
@@ -84,7 +84,7 @@
<h1>Calculation of time weighted average concentrations with mkin</h1>
<h4 class="author">Johannes Ranke</h4>
- <h4 class="date">2018-09-14</h4>
+ <h4 class="date">2018-09-18</h4>
<div class="hidden name"><code>twa.Rmd</code></div>
diff --git a/docs/articles/web_only/FOCUS_Z.html b/docs/articles/web_only/FOCUS_Z.html
index 381c9e4f..a3e743d1 100644
--- a/docs/articles/web_only/FOCUS_Z.html
+++ b/docs/articles/web_only/FOCUS_Z.html
@@ -29,7 +29,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../../index.html">mkin</a>
- <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.5</span>
+ <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.6</span>
</span>
</div>
@@ -84,7 +84,7 @@
<h1>Example evaluation of FOCUS dataset Z</h1>
<h4 class="author">Johannes Ranke</h4>
- <h4 class="date">2018-09-14</h4>
+ <h4 class="date">2018-09-18</h4>
<div class="hidden name"><code>FOCUS_Z.Rmd</code></div>
diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html
index 9aac1ab2..3b3e9150 100644
--- a/docs/articles/web_only/compiled_models.html
+++ b/docs/articles/web_only/compiled_models.html
@@ -29,7 +29,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../../index.html">mkin</a>
- <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.5</span>
+ <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.6</span>
</span>
</div>
@@ -84,7 +84,7 @@
<h1>Performance benefit by using compiled model definitions in mkin</h1>
<h4 class="author">Johannes Ranke</h4>
- <h4 class="date">2018-09-14</h4>
+ <h4 class="date">2018-09-18</h4>
<div class="hidden name"><code>compiled_models.Rmd</code></div>
@@ -125,9 +125,9 @@
<a class="sourceLine" id="cb5-16" data-line-number="16">}</a></code></pre></div>
<pre><code>## Lade nötiges Paket: rbenchmark</code></pre>
<pre><code>## test replications elapsed relative user.self sys.self
-## 3 deSolve, compiled 3 2.134 1.000 2.132 0
-## 1 deSolve, not compiled 3 16.165 7.575 16.157 0
-## 2 Eigenvalue based 3 2.597 1.217 2.595 0
+## 3 deSolve, compiled 3 2.001 1.000 1.999 0
+## 1 deSolve, not compiled 3 15.374 7.683 15.368 0
+## 2 Eigenvalue based 3 2.439 1.219 2.438 0
## user.child sys.child
## 3 0 0
## 1 0 0
@@ -156,8 +156,8 @@
<a class="sourceLine" id="cb8-16" data-line-number="16">}</a></code></pre></div>
<pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre>
<pre><code>## test replications elapsed relative user.self sys.self
-## 2 deSolve, compiled 3 3.717 1.000 3.715 0
-## 1 deSolve, not compiled 3 34.646 9.321 34.630 0
+## 2 deSolve, compiled 3 3.608 1.000 3.607 0
+## 1 deSolve, not compiled 3 33.150 9.188 33.135 0
## user.child sys.child
## 2 0 0
## 1 0 0</code></pre>

Contact - Imprint