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authorJohannes Ranke <jranke@uni-bremen.de>2018-03-11 22:12:51 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2018-03-11 22:12:51 +0100
commitd185c26e4909efbae9dc4210ed9eac4b2600910e (patch)
tree7ac9660d439a6de997dac800d09c82404027ef9a /docs/articles
parenta0bbfd3291aaa1a55438b8746c1e3cfb58ce4172 (diff)
Static docs rebuilt again, with current pkgdown
Diffstat (limited to 'docs/articles')
-rw-r--r--docs/articles/FOCUS_D.html13
-rw-r--r--docs/articles/FOCUS_L.R86
-rw-r--r--docs/articles/FOCUS_L.html49
-rw-r--r--docs/articles/FOCUS_Z.html7
-rw-r--r--docs/articles/compiled_models.html19
-rw-r--r--docs/articles/index.html2
-rw-r--r--docs/articles/mkin.html7
-rw-r--r--docs/articles/twa.html7
8 files changed, 62 insertions, 128 deletions
diff --git a/docs/articles/FOCUS_D.html b/docs/articles/FOCUS_D.html
index d85246f8..a8002acd 100644
--- a/docs/articles/FOCUS_D.html
+++ b/docs/articles/FOCUS_D.html
@@ -9,7 +9,10 @@
<!-- jquery --><script src="https://code.jquery.com/jquery-3.1.0.min.js" integrity="sha384-nrOSfDHtoPMzJHjVTdCopGqIqeYETSXhZDFyniQ8ZHcVy08QesyHcnOUpMpqnmWq" crossorigin="anonymous"></script><!-- Bootstrap --><link href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-BVYiiSIFeK1dGmJRAkycuHAHRg32OmUcww7on3RYdg4Va+PmSTsz/K68vbdEjh4u" crossorigin="anonymous">
<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script><!-- Font Awesome icons --><link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
<!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet">
-<script src="../jquery.sticky-kit.min.js"></script><script src="../pkgdown.js"></script><!-- mathjax --><script src="https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script><!--[if lt IE 9]>
+<script src="../jquery.sticky-kit.min.js"></script><script src="../pkgdown.js"></script><meta property="og:title" content="Example evaluation of FOCUS Example Dataset D">
+<meta property="og:description" content="">
+<meta name="twitter:card" content="summary">
+<!-- mathjax --><script src="https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script><!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]-->
@@ -77,7 +80,7 @@
<h1>Example evaluation of FOCUS Example Dataset D</h1>
<h4 class="author">Johannes Ranke</h4>
- <h4 class="date">2018-03-09</h4>
+ <h4 class="date">2018-03-11</h4>
</div>
@@ -152,8 +155,8 @@
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(fit)</code></pre></div>
<pre><code>## mkin version: 0.9.46.3
## R version: 3.4.3
-## Date of fit: Fri Mar 9 23:09:48 2018
-## Date of summary: Fri Mar 9 23:09:48 2018
+## Date of fit: Sun Mar 11 22:11:56 2018
+## Date of summary: Sun Mar 11 22:11:57 2018
##
## Equations:
## d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent
@@ -161,7 +164,7 @@
##
## Model predictions using solution type deSolve
##
-## Fitted with method Port using 153 model solutions performed in 0.99 s
+## Fitted with method Port using 153 model solutions performed in 0.984 s
##
## Weighting: none
##
diff --git a/docs/articles/FOCUS_L.R b/docs/articles/FOCUS_L.R
deleted file mode 100644
index 063e3d57..00000000
--- a/docs/articles/FOCUS_L.R
+++ /dev/null
@@ -1,86 +0,0 @@
-## ---- include = FALSE----------------------------------------------------
-library(knitr)
-opts_chunk$set(tidy = FALSE, cache = FALSE)
-
-## ------------------------------------------------------------------------
-library("mkin", quietly = TRUE)
-FOCUS_2006_L1 = data.frame(
- t = rep(c(0, 1, 2, 3, 5, 7, 14, 21, 30), each = 2),
- parent = c(88.3, 91.4, 85.6, 84.5, 78.9, 77.6,
- 72.0, 71.9, 50.3, 59.4, 47.0, 45.1,
- 27.7, 27.3, 10.0, 10.4, 2.9, 4.0))
-FOCUS_2006_L1_mkin <- mkin_wide_to_long(FOCUS_2006_L1)
-
-## ------------------------------------------------------------------------
-m.L1.SFO <- mkinfit("SFO", FOCUS_2006_L1_mkin, quiet = TRUE)
-summary(m.L1.SFO)
-
-## ----fig.width = 6, fig.height = 5---------------------------------------
-plot(m.L1.SFO, show_errmin = TRUE, main = "FOCUS L1 - SFO")
-
-## ----fig.width = 6, fig.height = 5---------------------------------------
-mkinresplot(m.L1.SFO, ylab = "Observed", xlab = "Time")
-
-## ----fig.width = 6, fig.height = 5---------------------------------------
-m.L1.FOMC <- mkinfit("FOMC", FOCUS_2006_L1_mkin, quiet=TRUE)
-plot(m.L1.FOMC, show_errmin = TRUE, main = "FOCUS L1 - FOMC")
-summary(m.L1.FOMC, data = FALSE)
-
-## ------------------------------------------------------------------------
-FOCUS_2006_L2 = data.frame(
- t = rep(c(0, 1, 3, 7, 14, 28), each = 2),
- parent = c(96.1, 91.8, 41.4, 38.7,
- 19.3, 22.3, 4.6, 4.6,
- 2.6, 1.2, 0.3, 0.6))
-FOCUS_2006_L2_mkin <- mkin_wide_to_long(FOCUS_2006_L2)
-
-## ----fig.width = 7, fig.height = 6---------------------------------------
-m.L2.SFO <- mkinfit("SFO", FOCUS_2006_L2_mkin, quiet=TRUE)
-plot(m.L2.SFO, show_residuals = TRUE, show_errmin = TRUE,
- main = "FOCUS L2 - SFO")
-
-## ----fig.width = 7, fig.height = 6---------------------------------------
-m.L2.FOMC <- mkinfit("FOMC", FOCUS_2006_L2_mkin, quiet = TRUE)
-plot(m.L2.FOMC, show_residuals = TRUE,
- main = "FOCUS L2 - FOMC")
-summary(m.L2.FOMC, data = FALSE)
-
-## ----fig.width = 7, fig.height = 6---------------------------------------
-m.L2.DFOP <- mkinfit("DFOP", FOCUS_2006_L2_mkin, quiet = TRUE)
-plot(m.L2.DFOP, show_residuals = TRUE, show_errmin = TRUE,
- main = "FOCUS L2 - DFOP")
-summary(m.L2.DFOP, data = FALSE)
-
-## ------------------------------------------------------------------------
-FOCUS_2006_L3 = data.frame(
- t = c(0, 3, 7, 14, 30, 60, 91, 120),
- parent = c(97.8, 60, 51, 43, 35, 22, 15, 12))
-FOCUS_2006_L3_mkin <- mkin_wide_to_long(FOCUS_2006_L3)
-
-## ----fig.height = 8------------------------------------------------------
-# Only use one core here, not to offend the CRAN checks
-mm.L3 <- mmkin(c("SFO", "FOMC", "DFOP"), cores = 1,
- list("FOCUS L3" = FOCUS_2006_L3_mkin), quiet = TRUE)
-plot(mm.L3)
-
-## ----fig.height = 5------------------------------------------------------
-summary(mm.L3[["DFOP", 1]])
-plot(mm.L3[["DFOP", 1]], show_errmin = TRUE)
-
-## ------------------------------------------------------------------------
-FOCUS_2006_L4 = data.frame(
- t = c(0, 3, 7, 14, 30, 60, 91, 120),
- parent = c(96.6, 96.3, 94.3, 88.8, 74.9, 59.9, 53.5, 49.0))
-FOCUS_2006_L4_mkin <- mkin_wide_to_long(FOCUS_2006_L4)
-
-## ----fig.height = 6------------------------------------------------------
-# Only use one core here, not to offend the CRAN checks
-mm.L4 <- mmkin(c("SFO", "FOMC"), cores = 1,
- list("FOCUS L4" = FOCUS_2006_L4_mkin),
- quiet = TRUE)
-plot(mm.L4)
-
-## ----fig.height = 8------------------------------------------------------
-summary(mm.L4[["SFO", 1]], data = FALSE)
-summary(mm.L4[["FOMC", 1]], data = FALSE)
-
diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html
index 196a0c4f..a23876ec 100644
--- a/docs/articles/FOCUS_L.html
+++ b/docs/articles/FOCUS_L.html
@@ -9,7 +9,10 @@
<!-- jquery --><script src="https://code.jquery.com/jquery-3.1.0.min.js" integrity="sha384-nrOSfDHtoPMzJHjVTdCopGqIqeYETSXhZDFyniQ8ZHcVy08QesyHcnOUpMpqnmWq" crossorigin="anonymous"></script><!-- Bootstrap --><link href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-BVYiiSIFeK1dGmJRAkycuHAHRg32OmUcww7on3RYdg4Va+PmSTsz/K68vbdEjh4u" crossorigin="anonymous">
<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script><!-- Font Awesome icons --><link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
<!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet">
-<script src="../jquery.sticky-kit.min.js"></script><script src="../pkgdown.js"></script><!-- mathjax --><script src="https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script><!--[if lt IE 9]>
+<script src="../jquery.sticky-kit.min.js"></script><script src="../pkgdown.js"></script><meta property="og:title" content="Example evaluation of FOCUS Laboratory Data L1 to L3">
+<meta property="og:description" content="">
+<meta name="twitter:card" content="summary">
+<!-- mathjax --><script src="https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script><!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]-->
@@ -77,7 +80,7 @@
<h1>Example evaluation of FOCUS Laboratory Data L1 to L3</h1>
<h4 class="author">Johannes Ranke</h4>
- <h4 class="date">2018-03-09</h4>
+ <h4 class="date">2018-03-11</h4>
</div>
@@ -100,15 +103,15 @@ FOCUS_<span class="dv">2006</span>_L1_mkin &lt;-<span class="st"> </span><span c
<span class="kw">summary</span>(m.L1.SFO)</code></pre></div>
<pre><code>## mkin version: 0.9.46.3
## R version: 3.4.3
-## Date of fit: Fri Mar 9 23:09:50 2018
-## Date of summary: Fri Mar 9 23:09:50 2018
+## Date of fit: Sun Mar 11 22:11:58 2018
+## Date of summary: Sun Mar 11 22:11:58 2018
##
## Equations:
## d_parent/dt = - k_parent_sink * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 37 model solutions performed in 0.264 s
+## Fitted with method Port using 37 model solutions performed in 0.235 s
##
## Weighting: none
##
@@ -191,15 +194,15 @@ FOCUS_<span class="dv">2006</span>_L1_mkin &lt;-<span class="st"> </span><span c
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(m.L1.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
<pre><code>## mkin version: 0.9.46.3
## R version: 3.4.3
-## Date of fit: Fri Mar 9 23:09:52 2018
-## Date of summary: Fri Mar 9 23:09:52 2018
+## Date of fit: Sun Mar 11 22:12:01 2018
+## Date of summary: Sun Mar 11 22:12:01 2018
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 611 model solutions performed in 1.451 s
+## Fitted with method Port using 611 model solutions performed in 1.458 s
##
## Weighting: none
##
@@ -286,15 +289,15 @@ FOCUS_<span class="dv">2006</span>_L2_mkin &lt;-<span class="st"> </span><span c
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(m.L2.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
<pre><code>## mkin version: 0.9.46.3
## R version: 3.4.3
-## Date of fit: Fri Mar 9 23:09:53 2018
-## Date of summary: Fri Mar 9 23:09:53 2018
+## Date of fit: Sun Mar 11 22:12:01 2018
+## Date of summary: Sun Mar 11 22:12:01 2018
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 81 model solutions performed in 0.175 s
+## Fitted with method Port using 81 model solutions performed in 0.158 s
##
## Weighting: none
##
@@ -357,8 +360,8 @@ FOCUS_<span class="dv">2006</span>_L2_mkin &lt;-<span class="st"> </span><span c
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(m.L2.DFOP, <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
<pre><code>## mkin version: 0.9.46.3
## R version: 3.4.3
-## Date of fit: Fri Mar 9 23:09:54 2018
-## Date of summary: Fri Mar 9 23:09:54 2018
+## Date of fit: Sun Mar 11 22:12:02 2018
+## Date of summary: Sun Mar 11 22:12:02 2018
##
## Equations:
## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -367,7 +370,7 @@ FOCUS_<span class="dv">2006</span>_L2_mkin &lt;-<span class="st"> </span><span c
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 336 model solutions performed in 0.739 s
+## Fitted with method Port using 336 model solutions performed in 0.681 s
##
## Weighting: none
##
@@ -449,8 +452,8 @@ mm.L3 &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mmkin
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(mm.L3[[<span class="st">"DFOP"</span>, <span class="dv">1</span>]])</code></pre></div>
<pre><code>## mkin version: 0.9.46.3
## R version: 3.4.3
-## Date of fit: Fri Mar 9 23:09:55 2018
-## Date of summary: Fri Mar 9 23:09:55 2018
+## Date of fit: Sun Mar 11 22:12:03 2018
+## Date of summary: Sun Mar 11 22:12:03 2018
##
## Equations:
## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -459,7 +462,7 @@ mm.L3 &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mmkin
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 137 model solutions performed in 0.293 s
+## Fitted with method Port using 137 model solutions performed in 0.272 s
##
## Weighting: none
##
@@ -550,15 +553,15 @@ mm.L4 &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mmkin
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(mm.L4[[<span class="st">"SFO"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
<pre><code>## mkin version: 0.9.46.3
## R version: 3.4.3
-## Date of fit: Fri Mar 9 23:09:55 2018
-## Date of summary: Fri Mar 9 23:09:56 2018
+## Date of fit: Sun Mar 11 22:12:04 2018
+## Date of summary: Sun Mar 11 22:12:04 2018
##
## Equations:
## d_parent/dt = - k_parent_sink * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 46 model solutions performed in 0.09 s
+## Fitted with method Port using 46 model solutions performed in 0.092 s
##
## Weighting: none
##
@@ -610,15 +613,15 @@ mm.L4 &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mmkin
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(mm.L4[[<span class="st">"FOMC"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
<pre><code>## mkin version: 0.9.46.3
## R version: 3.4.3
-## Date of fit: Fri Mar 9 23:09:56 2018
-## Date of summary: Fri Mar 9 23:09:56 2018
+## Date of fit: Sun Mar 11 22:12:04 2018
+## Date of summary: Sun Mar 11 22:12:04 2018
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 66 model solutions performed in 0.134 s
+## Fitted with method Port using 66 model solutions performed in 0.13 s
##
## Weighting: none
##
diff --git a/docs/articles/FOCUS_Z.html b/docs/articles/FOCUS_Z.html
index 606121ff..78a00062 100644
--- a/docs/articles/FOCUS_Z.html
+++ b/docs/articles/FOCUS_Z.html
@@ -9,7 +9,10 @@
<!-- jquery --><script src="https://code.jquery.com/jquery-3.1.0.min.js" integrity="sha384-nrOSfDHtoPMzJHjVTdCopGqIqeYETSXhZDFyniQ8ZHcVy08QesyHcnOUpMpqnmWq" crossorigin="anonymous"></script><!-- Bootstrap --><link href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-BVYiiSIFeK1dGmJRAkycuHAHRg32OmUcww7on3RYdg4Va+PmSTsz/K68vbdEjh4u" crossorigin="anonymous">
<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script><!-- Font Awesome icons --><link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
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-<script src="../jquery.sticky-kit.min.js"></script><script src="../pkgdown.js"></script><!-- mathjax --><script src="https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script><!--[if lt IE 9]>
+<script src="../jquery.sticky-kit.min.js"></script><script src="../pkgdown.js"></script><meta property="og:title" content="Example evaluation of FOCUS dataset Z">
+<meta property="og:description" content="">
+<meta name="twitter:card" content="summary">
+<!-- mathjax --><script src="https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script><!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]-->
@@ -77,7 +80,7 @@
<h1>Example evaluation of FOCUS dataset Z</h1>
<h4 class="author">Johannes Ranke</h4>
- <h4 class="date">2018-03-09</h4>
+ <h4 class="date">2018-03-11</h4>
</div>
diff --git a/docs/articles/compiled_models.html b/docs/articles/compiled_models.html
index 915e5474..8923acac 100644
--- a/docs/articles/compiled_models.html
+++ b/docs/articles/compiled_models.html
@@ -9,7 +9,10 @@
<!-- jquery --><script src="https://code.jquery.com/jquery-3.1.0.min.js" integrity="sha384-nrOSfDHtoPMzJHjVTdCopGqIqeYETSXhZDFyniQ8ZHcVy08QesyHcnOUpMpqnmWq" crossorigin="anonymous"></script><!-- Bootstrap --><link href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-BVYiiSIFeK1dGmJRAkycuHAHRg32OmUcww7on3RYdg4Va+PmSTsz/K68vbdEjh4u" crossorigin="anonymous">
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+<script src="../jquery.sticky-kit.min.js"></script><script src="../pkgdown.js"></script><meta property="og:title" content="Performance benefit by using compiled model definitions in mkin">
+<meta property="og:description" content="">
+<meta name="twitter:card" content="summary">
+<!-- mathjax --><script src="https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script><!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]-->
@@ -77,7 +80,7 @@
<h1>Performance benefit by using compiled model definitions in mkin</h1>
<h4 class="author">Johannes Ranke</h4>
- <h4 class="date">2018-03-09</h4>
+ <h4 class="date">2018-03-11</h4>
</div>
@@ -115,9 +118,9 @@ SFO_SFO &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mki
}</code></pre></div>
<pre><code>## Lade nötiges Paket: rbenchmark</code></pre>
<pre><code>## test replications elapsed relative user.self sys.self
-## 3 deSolve, compiled 3 2.044 1.000 2.042 0
-## 1 deSolve, not compiled 3 14.198 6.946 14.185 0
-## 2 Eigenvalue based 3 2.751 1.346 2.747 0
+## 3 deSolve, compiled 3 1.978 1.000 1.976 0
+## 1 deSolve, not compiled 3 13.541 6.846 13.531 0
+## 2 Eigenvalue based 3 2.332 1.179 2.330 0
## user.child sys.child
## 3 0 0
## 1 0 0
@@ -146,12 +149,12 @@ SFO_SFO &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mki
}</code></pre></div>
<pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre>
<pre><code>## test replications elapsed relative user.self sys.self
-## 2 deSolve, compiled 3 3.695 1.000 3.692 0
-## 1 deSolve, not compiled 3 31.143 8.428 31.114 0
+## 2 deSolve, compiled 3 3.334 1.000 3.331 0
+## 1 deSolve, not compiled 3 29.917 8.973 29.888 0
## user.child sys.child
## 2 0 0
## 1 0 0</code></pre>
-<p>Here we get a performance benefit of a factor of 8 using the version of the differential equation model compiled from C code!</p>
+<p>Here we get a performance benefit of a factor of 9 using the version of the differential equation model compiled from C code!</p>
<p>This vignette was built with mkin 0.9.46.3 on</p>
<pre><code>## R version 3.4.3 (2017-11-30)
## Platform: x86_64-pc-linux-gnu (64-bit)
diff --git a/docs/articles/index.html b/docs/articles/index.html
index c0c5864b..f338f1b2 100644
--- a/docs/articles/index.html
+++ b/docs/articles/index.html
@@ -27,6 +27,7 @@
<script src="../pkgdown.js"></script>
+<meta property="og:title" content="Articles" />
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
@@ -134,3 +135,4 @@
</body>
</html>
+
diff --git a/docs/articles/mkin.html b/docs/articles/mkin.html
index f668b500..7b26b3f1 100644
--- a/docs/articles/mkin.html
+++ b/docs/articles/mkin.html
@@ -9,7 +9,10 @@
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<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script><!-- Font Awesome icons --><link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
<!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet">
-<script src="../jquery.sticky-kit.min.js"></script><script src="../pkgdown.js"></script><!-- mathjax --><script src="https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script><!--[if lt IE 9]>
+<script src="../jquery.sticky-kit.min.js"></script><script src="../pkgdown.js"></script><meta property="og:title" content="Introduction to mkin">
+<meta property="og:description" content="">
+<meta name="twitter:card" content="summary">
+<!-- mathjax --><script src="https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script><!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]-->
@@ -77,7 +80,7 @@
<h1>Introduction to mkin</h1>
<h4 class="author">Johannes Ranke</h4>
- <h4 class="date">2018-03-09</h4>
+ <h4 class="date">2018-03-11</h4>
</div>
diff --git a/docs/articles/twa.html b/docs/articles/twa.html
index e5b68cfe..7f4c941e 100644
--- a/docs/articles/twa.html
+++ b/docs/articles/twa.html
@@ -9,7 +9,10 @@
<!-- jquery --><script src="https://code.jquery.com/jquery-3.1.0.min.js" integrity="sha384-nrOSfDHtoPMzJHjVTdCopGqIqeYETSXhZDFyniQ8ZHcVy08QesyHcnOUpMpqnmWq" crossorigin="anonymous"></script><!-- Bootstrap --><link href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-BVYiiSIFeK1dGmJRAkycuHAHRg32OmUcww7on3RYdg4Va+PmSTsz/K68vbdEjh4u" crossorigin="anonymous">
<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script><!-- Font Awesome icons --><link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
<!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet">
-<script src="../jquery.sticky-kit.min.js"></script><script src="../pkgdown.js"></script><!-- mathjax --><script src="https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script><!--[if lt IE 9]>
+<script src="../jquery.sticky-kit.min.js"></script><script src="../pkgdown.js"></script><meta property="og:title" content="Calculation of time weighted average concentrations with mkin">
+<meta property="og:description" content="">
+<meta name="twitter:card" content="summary">
+<!-- mathjax --><script src="https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script><!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]-->
@@ -77,7 +80,7 @@
<h1>Calculation of time weighted average concentrations with mkin</h1>
<h4 class="author">Johannes Ranke</h4>
- <h4 class="date">2018-03-09</h4>
+ <h4 class="date">2018-03-11</h4>
</div>

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