diff options
author | Johannes Ranke <jranke@uni-bremen.de> | 2019-03-04 14:09:45 +0100 |
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committer | Johannes Ranke <jranke@uni-bremen.de> | 2019-03-04 14:09:45 +0100 |
commit | 9d6a975a0e3850a36889a18b5d9929d27b901ab3 (patch) | |
tree | 2130084703b45ba08a7f94e0d446a081a4ba2894 /docs/articles | |
parent | d0b124992232dde30fbff83dd4eeae8fc977d3ba (diff) |
Make some example output more reproducible
In order to avoid some unnecessary documentation rebuilds
Diffstat (limited to 'docs/articles')
-rw-r--r-- | docs/articles/FOCUS_D.html | 6 | ||||
-rw-r--r-- | docs/articles/FOCUS_L.html | 36 | ||||
-rw-r--r-- | docs/articles/web_only/NAFTA_examples.html | 14 | ||||
-rw-r--r-- | docs/articles/web_only/compiled_models.html | 10 |
4 files changed, 33 insertions, 33 deletions
diff --git a/docs/articles/FOCUS_D.html b/docs/articles/FOCUS_D.html index fabb567a..376acee2 100644 --- a/docs/articles/FOCUS_D.html +++ b/docs/articles/FOCUS_D.html @@ -166,8 +166,8 @@ <div class="sourceCode" id="cb10"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb10-1" title="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(fit)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.48.1 ## R version used for fitting: 3.5.2 -## Date of fit: Mon Mar 4 10:09:33 2019 -## Date of summary: Mon Mar 4 10:09:33 2019 +## Date of fit: Mon Mar 4 14:06:39 2019 +## Date of summary: Mon Mar 4 14:06:39 2019 ## ## Equations: ## d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent @@ -175,7 +175,7 @@ ## ## Model predictions using solution type deSolve ## -## Fitted with method Port using 153 model solutions performed in 0.687 s +## Fitted with method Port using 153 model solutions performed in 0.693 s ## ## Weighting: none ## diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html index 7157f973..5dac9999 100644 --- a/docs/articles/FOCUS_L.html +++ b/docs/articles/FOCUS_L.html @@ -114,15 +114,15 @@ <a class="sourceLine" id="cb2-2" title="2"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L1.SFO)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.48.1 ## R version used for fitting: 3.5.2 -## Date of fit: Mon Mar 4 10:09:35 2019 -## Date of summary: Mon Mar 4 10:09:35 2019 +## Date of fit: Mon Mar 4 14:06:41 2019 +## Date of summary: Mon Mar 4 14:06:41 2019 ## ## Equations: ## d_parent/dt = - k_parent_sink * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 37 model solutions performed in 0.102 s +## Fitted with method Port using 37 model solutions performed in 0.095 s ## ## Weighting: none ## @@ -205,15 +205,15 @@ <div class="sourceCode" id="cb7"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb7-1" title="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L1.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.48.1 ## R version used for fitting: 3.5.2 -## Date of fit: Mon Mar 4 10:09:36 2019 -## Date of summary: Mon Mar 4 10:09:36 2019 +## Date of fit: Mon Mar 4 14:06:43 2019 +## Date of summary: Mon Mar 4 14:06:43 2019 ## ## Equations: ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 611 model solutions performed in 1.508 s +## Fitted with method Port using 611 model solutions performed in 1.502 s ## ## Weighting: none ## @@ -300,8 +300,8 @@ <div class="sourceCode" id="cb12"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb12-1" title="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L2.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.48.1 ## R version used for fitting: 3.5.2 -## Date of fit: Mon Mar 4 10:09:37 2019 -## Date of summary: Mon Mar 4 10:09:37 2019 +## Date of fit: Mon Mar 4 14:06:43 2019 +## Date of summary: Mon Mar 4 14:06:43 2019 ## ## Equations: ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent @@ -373,8 +373,8 @@ ## covariance matrix; singular system.</code></pre> <pre><code>## mkin version used for fitting: 0.9.48.1 ## R version used for fitting: 3.5.2 -## Date of fit: Mon Mar 4 10:09:38 2019 -## Date of summary: Mon Mar 4 10:09:38 2019 +## Date of fit: Mon Mar 4 14:06:44 2019 +## Date of summary: Mon Mar 4 14:06:44 2019 ## ## Equations: ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * @@ -383,7 +383,7 @@ ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 336 model solutions performed in 0.841 s +## Fitted with method Port using 336 model solutions performed in 0.84 s ## ## Weighting: none ## @@ -463,8 +463,8 @@ <div class="sourceCode" id="cb20"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb20-1" title="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L3[[<span class="st">"DFOP"</span>, <span class="dv">1</span>]])</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.48.1 ## R version used for fitting: 3.5.2 -## Date of fit: Mon Mar 4 10:09:39 2019 -## Date of summary: Mon Mar 4 10:09:39 2019 +## Date of fit: Mon Mar 4 14:06:45 2019 +## Date of summary: Mon Mar 4 14:06:46 2019 ## ## Equations: ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * @@ -564,8 +564,8 @@ <div class="sourceCode" id="cb25"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb25-1" title="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L4[[<span class="st">"SFO"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.48.1 ## R version used for fitting: 3.5.2 -## Date of fit: Mon Mar 4 10:09:40 2019 -## Date of summary: Mon Mar 4 10:09:40 2019 +## Date of fit: Mon Mar 4 14:06:46 2019 +## Date of summary: Mon Mar 4 14:06:46 2019 ## ## Equations: ## d_parent/dt = - k_parent_sink * parent @@ -624,15 +624,15 @@ <div class="sourceCode" id="cb27"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb27-1" title="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L4[[<span class="st">"FOMC"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.48.1 ## R version used for fitting: 3.5.2 -## Date of fit: Mon Mar 4 10:09:40 2019 -## Date of summary: Mon Mar 4 10:09:40 2019 +## Date of fit: Mon Mar 4 14:06:46 2019 +## Date of summary: Mon Mar 4 14:06:46 2019 ## ## Equations: ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 66 model solutions performed in 0.162 s +## Fitted with method Port using 66 model solutions performed in 0.173 s ## ## Weighting: none ## diff --git a/docs/articles/web_only/NAFTA_examples.html b/docs/articles/web_only/NAFTA_examples.html index db1fc478..12e5d522 100644 --- a/docs/articles/web_only/NAFTA_examples.html +++ b/docs/articles/web_only/NAFTA_examples.html @@ -347,7 +347,7 @@ ## DT50 DT90 DT50_rep ## SFO 86.3 287 86.3 ## IORE 53.4 668 201.0 -## DFOP 55.6 517 253.5 +## DFOP 55.6 517 253.0 ## ## Representative half-life: ## [1] 201.0316</code></pre> @@ -492,9 +492,9 @@ ## ## DTx values: ## DT50 DT90 DT50_rep -## SFO 14.0 46.5 13.99 +## SFO 14.0 46.5 14.00 ## IORE 16.4 29.4 8.86 -## DFOP 14.0 46.5 13.99 +## DFOP 14.0 46.5 14.00 ## ## Representative half-life: ## [1] 8.862193</code></pre> @@ -644,9 +644,9 @@ ## ## DTx values: ## DT50 DT90 DT50_rep -## SFO 11.8 39.1 11.76 +## SFO 11.8 39.1 11.80 ## IORE 12.9 31.4 9.46 -## DFOP 11.8 39.1 11.76 +## DFOP 11.8 39.1 11.80 ## ## Representative half-life: ## [1] 9.461912</code></pre> @@ -830,9 +830,9 @@ ## ## DTx values: ## DT50 DT90 DT50_rep -## SFO 143 474 142.7 +## SFO 143 474 143.0 ## IORE 131 236 71.2 -## DFOP 143 474 142.7 +## DFOP 143 474 143.0 ## ## Representative half-life: ## [1] 71.18014</code></pre> diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html index 1d96ea76..269b1098 100644 --- a/docs/articles/web_only/compiled_models.html +++ b/docs/articles/web_only/compiled_models.html @@ -129,9 +129,9 @@ <a class="sourceLine" id="cb5-16" title="16">}</a></code></pre></div> <pre><code>## Lade nötiges Paket: rbenchmark</code></pre> <pre><code>## test replications elapsed relative user.self sys.self -## 3 deSolve, compiled 3 2.313 1.000 2.312 0 -## 1 deSolve, not compiled 3 17.602 7.610 17.595 0 -## 2 Eigenvalue based 3 2.853 1.233 2.851 0 +## 3 deSolve, compiled 3 2.310 1.000 2.308 0 +## 1 deSolve, not compiled 3 17.509 7.580 17.500 0 +## 2 Eigenvalue based 3 2.859 1.238 2.858 0 ## user.child sys.child ## 3 0 0 ## 1 0 0 @@ -160,8 +160,8 @@ <a class="sourceLine" id="cb8-16" title="16">}</a></code></pre></div> <pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre> <pre><code>## test replications elapsed relative user.self sys.self -## 2 deSolve, compiled 3 4.049 1.000 4.047 0 -## 1 deSolve, not compiled 3 37.135 9.171 37.119 0 +## 2 deSolve, compiled 3 4.074 1.000 4.072 0 +## 1 deSolve, not compiled 3 37.219 9.136 37.203 0 ## user.child sys.child ## 2 0 0 ## 1 0 0</code></pre> |