diff options
author | Johannes Ranke <jranke@uni-bremen.de> | 2018-09-14 11:38:43 +0200 |
---|---|---|
committer | Johannes Ranke <jranke@uni-bremen.de> | 2018-09-14 11:38:43 +0200 |
commit | c4a35c0e141a4bb05ba508914bebdc2884109e76 (patch) | |
tree | 81464f3e17e683dfc7614dadf0899850517954f7 /docs/articles | |
parent | dd65f3503e9d091c82aedcf91635fcf40f778bf9 (diff) |
Exclude more example code from CRAN checks
to avoid NOTES about long execution times.
Static documentation rebuilt by pkgdown with run_dont_run = TRUE
Diffstat (limited to 'docs/articles')
-rw-r--r-- | docs/articles/FOCUS_D.html | 2 | ||||
-rw-r--r-- | docs/articles/FOCUS_L.html | 44 | ||||
-rw-r--r-- | docs/articles/FOCUS_Z.html | 2 | ||||
-rw-r--r-- | docs/articles/compiled_models.html | 12 | ||||
-rw-r--r-- | docs/articles/index.html | 2 | ||||
-rw-r--r-- | docs/articles/mkin.html | 2 | ||||
-rw-r--r-- | docs/articles/twa.html | 2 |
7 files changed, 33 insertions, 33 deletions
diff --git a/docs/articles/FOCUS_D.html b/docs/articles/FOCUS_D.html index 195570b1..3ed8004e 100644 --- a/docs/articles/FOCUS_D.html +++ b/docs/articles/FOCUS_D.html @@ -29,7 +29,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">mkin</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.3</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.4</span> </span> </div> diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html index f7bbf961..cc069d1a 100644 --- a/docs/articles/FOCUS_L.html +++ b/docs/articles/FOCUS_L.html @@ -29,7 +29,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">mkin</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.3</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.4</span> </span> </div> @@ -110,15 +110,15 @@ <a class="sourceLine" id="cb2-2" data-line-number="2"><span class="kw">summary</span>(m.L1.SFO)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.47.3 ## R version used for fitting: 3.5.1 -## Date of fit: Fri Sep 14 06:39:28 2018 -## Date of summary: Fri Sep 14 06:39:28 2018 +## Date of fit: Fri Sep 14 11:36:13 2018 +## Date of summary: Fri Sep 14 11:36:13 2018 ## ## Equations: ## d_parent/dt = - k_parent_sink * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 37 model solutions performed in 0.091 s +## Fitted with method Port using 37 model solutions performed in 0.085 s ## ## Weighting: none ## @@ -201,15 +201,15 @@ <div class="sourceCode" id="cb7"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb7-1" data-line-number="1"><span class="kw">summary</span>(m.L1.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.47.3 ## R version used for fitting: 3.5.1 -## Date of fit: Fri Sep 14 06:39:30 2018 -## Date of summary: Fri Sep 14 06:39:30 2018 +## Date of fit: Fri Sep 14 11:36:14 2018 +## Date of summary: Fri Sep 14 11:36:14 2018 ## ## Equations: ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 611 model solutions performed in 1.333 s +## Fitted with method Port using 611 model solutions performed in 1.405 s ## ## Weighting: none ## @@ -296,15 +296,15 @@ <div class="sourceCode" id="cb12"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb12-1" data-line-number="1"><span class="kw">summary</span>(m.L2.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.47.3 ## R version used for fitting: 3.5.1 -## Date of fit: Fri Sep 14 06:39:30 2018 -## Date of summary: Fri Sep 14 06:39:30 2018 +## Date of fit: Fri Sep 14 11:36:15 2018 +## Date of summary: Fri Sep 14 11:36:15 2018 ## ## Equations: ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 81 model solutions performed in 0.172 s +## Fitted with method Port using 81 model solutions performed in 0.188 s ## ## Weighting: none ## @@ -367,8 +367,8 @@ <div class="sourceCode" id="cb15"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb15-1" data-line-number="1"><span class="kw">summary</span>(m.L2.DFOP, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.47.3 ## R version used for fitting: 3.5.1 -## Date of fit: Fri Sep 14 06:39:31 2018 -## Date of summary: Fri Sep 14 06:39:31 2018 +## Date of fit: Fri Sep 14 11:36:16 2018 +## Date of summary: Fri Sep 14 11:36:16 2018 ## ## Equations: ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * @@ -377,7 +377,7 @@ ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 336 model solutions performed in 0.742 s +## Fitted with method Port using 336 model solutions performed in 0.833 s ## ## Weighting: none ## @@ -459,8 +459,8 @@ <div class="sourceCode" id="cb21"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb21-1" data-line-number="1"><span class="kw">summary</span>(mm.L3[[<span class="st">"DFOP"</span>, <span class="dv">1</span>]])</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.47.3 ## R version used for fitting: 3.5.1 -## Date of fit: Fri Sep 14 06:39:32 2018 -## Date of summary: Fri Sep 14 06:39:32 2018 +## Date of fit: Fri Sep 14 11:36:17 2018 +## Date of summary: Fri Sep 14 11:36:17 2018 ## ## Equations: ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * @@ -469,7 +469,7 @@ ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 137 model solutions performed in 0.312 s +## Fitted with method Port using 137 model solutions performed in 0.335 s ## ## Weighting: none ## @@ -560,15 +560,15 @@ <div class="sourceCode" id="cb26"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb26-1" data-line-number="1"><span class="kw">summary</span>(mm.L4[[<span class="st">"SFO"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.47.3 ## R version used for fitting: 3.5.1 -## Date of fit: Fri Sep 14 06:39:33 2018 -## Date of summary: Fri Sep 14 06:39:33 2018 +## Date of fit: Fri Sep 14 11:36:18 2018 +## Date of summary: Fri Sep 14 11:36:18 2018 ## ## Equations: ## d_parent/dt = - k_parent_sink * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 46 model solutions performed in 0.097 s +## Fitted with method Port using 46 model solutions performed in 0.099 s ## ## Weighting: none ## @@ -620,15 +620,15 @@ <div class="sourceCode" id="cb28"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb28-1" data-line-number="1"><span class="kw">summary</span>(mm.L4[[<span class="st">"FOMC"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div> <pre><code>## mkin version used for fitting: 0.9.47.3 ## R version used for fitting: 3.5.1 -## Date of fit: Fri Sep 14 06:39:33 2018 -## Date of summary: Fri Sep 14 06:39:33 2018 +## Date of fit: Fri Sep 14 11:36:18 2018 +## Date of summary: Fri Sep 14 11:36:18 2018 ## ## Equations: ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent ## ## Model predictions using solution type analytical ## -## Fitted with method Port using 66 model solutions performed in 0.143 s +## Fitted with method Port using 66 model solutions performed in 0.152 s ## ## Weighting: none ## diff --git a/docs/articles/FOCUS_Z.html b/docs/articles/FOCUS_Z.html index 9753abd6..ff0bd537 100644 --- a/docs/articles/FOCUS_Z.html +++ b/docs/articles/FOCUS_Z.html @@ -29,7 +29,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">mkin</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.3</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.4</span> </span> </div> diff --git a/docs/articles/compiled_models.html b/docs/articles/compiled_models.html index d93fe9e1..a6598fd4 100644 --- a/docs/articles/compiled_models.html +++ b/docs/articles/compiled_models.html @@ -29,7 +29,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">mkin</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.3</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.4</span> </span> </div> @@ -125,9 +125,9 @@ <a class="sourceLine" id="cb5-16" data-line-number="16">}</a></code></pre></div> <pre><code>## Lade nötiges Paket: rbenchmark</code></pre> <pre><code>## test replications elapsed relative user.self sys.self -## 3 deSolve, compiled 3 2.110 1.000 2.108 0 -## 1 deSolve, not compiled 3 16.442 7.792 16.433 0 -## 2 Eigenvalue based 3 2.593 1.229 2.592 0 +## 3 deSolve, compiled 3 2.205 1.000 2.203 0 +## 1 deSolve, not compiled 3 17.206 7.803 17.196 0 +## 2 Eigenvalue based 3 2.829 1.283 2.828 0 ## user.child sys.child ## 3 0 0 ## 1 0 0 @@ -156,8 +156,8 @@ <a class="sourceLine" id="cb8-16" data-line-number="16">}</a></code></pre></div> <pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre> <pre><code>## test replications elapsed relative user.self sys.self -## 2 deSolve, compiled 3 3.781 1.000 3.778 0 -## 1 deSolve, not compiled 3 34.742 9.189 34.725 0 +## 2 deSolve, compiled 3 3.874 1.000 3.866 0.004 +## 1 deSolve, not compiled 3 35.712 9.218 35.692 0.000 ## user.child sys.child ## 2 0 0 ## 1 0 0</code></pre> diff --git a/docs/articles/index.html b/docs/articles/index.html index dcaf33b8..e20ad2d4 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -58,7 +58,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">mkin</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.3</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.4</span> </span> </div> diff --git a/docs/articles/mkin.html b/docs/articles/mkin.html index 4d62b50d..bc76c2cf 100644 --- a/docs/articles/mkin.html +++ b/docs/articles/mkin.html @@ -29,7 +29,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">mkin</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.3</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.4</span> </span> </div> diff --git a/docs/articles/twa.html b/docs/articles/twa.html index 2952e887..a2f7f72a 100644 --- a/docs/articles/twa.html +++ b/docs/articles/twa.html @@ -29,7 +29,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">mkin</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.3</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.4</span> </span> </div> |