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authorJohannes Ranke <jranke@uni-bremen.de>2018-09-14 11:38:43 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2018-09-14 11:38:43 +0200
commitc4a35c0e141a4bb05ba508914bebdc2884109e76 (patch)
tree81464f3e17e683dfc7614dadf0899850517954f7 /docs/articles
parentdd65f3503e9d091c82aedcf91635fcf40f778bf9 (diff)
Exclude more example code from CRAN checks
to avoid NOTES about long execution times. Static documentation rebuilt by pkgdown with run_dont_run = TRUE
Diffstat (limited to 'docs/articles')
-rw-r--r--docs/articles/FOCUS_D.html2
-rw-r--r--docs/articles/FOCUS_L.html44
-rw-r--r--docs/articles/FOCUS_Z.html2
-rw-r--r--docs/articles/compiled_models.html12
-rw-r--r--docs/articles/index.html2
-rw-r--r--docs/articles/mkin.html2
-rw-r--r--docs/articles/twa.html2
7 files changed, 33 insertions, 33 deletions
diff --git a/docs/articles/FOCUS_D.html b/docs/articles/FOCUS_D.html
index 195570b1..3ed8004e 100644
--- a/docs/articles/FOCUS_D.html
+++ b/docs/articles/FOCUS_D.html
@@ -29,7 +29,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.3</span>
+ <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.4</span>
</span>
</div>
diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html
index f7bbf961..cc069d1a 100644
--- a/docs/articles/FOCUS_L.html
+++ b/docs/articles/FOCUS_L.html
@@ -29,7 +29,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.3</span>
+ <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.4</span>
</span>
</div>
@@ -110,15 +110,15 @@
<a class="sourceLine" id="cb2-2" data-line-number="2"><span class="kw">summary</span>(m.L1.SFO)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.3
## R version used for fitting: 3.5.1
-## Date of fit: Fri Sep 14 06:39:28 2018
-## Date of summary: Fri Sep 14 06:39:28 2018
+## Date of fit: Fri Sep 14 11:36:13 2018
+## Date of summary: Fri Sep 14 11:36:13 2018
##
## Equations:
## d_parent/dt = - k_parent_sink * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 37 model solutions performed in 0.091 s
+## Fitted with method Port using 37 model solutions performed in 0.085 s
##
## Weighting: none
##
@@ -201,15 +201,15 @@
<div class="sourceCode" id="cb7"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb7-1" data-line-number="1"><span class="kw">summary</span>(m.L1.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.3
## R version used for fitting: 3.5.1
-## Date of fit: Fri Sep 14 06:39:30 2018
-## Date of summary: Fri Sep 14 06:39:30 2018
+## Date of fit: Fri Sep 14 11:36:14 2018
+## Date of summary: Fri Sep 14 11:36:14 2018
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 611 model solutions performed in 1.333 s
+## Fitted with method Port using 611 model solutions performed in 1.405 s
##
## Weighting: none
##
@@ -296,15 +296,15 @@
<div class="sourceCode" id="cb12"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb12-1" data-line-number="1"><span class="kw">summary</span>(m.L2.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.3
## R version used for fitting: 3.5.1
-## Date of fit: Fri Sep 14 06:39:30 2018
-## Date of summary: Fri Sep 14 06:39:30 2018
+## Date of fit: Fri Sep 14 11:36:15 2018
+## Date of summary: Fri Sep 14 11:36:15 2018
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 81 model solutions performed in 0.172 s
+## Fitted with method Port using 81 model solutions performed in 0.188 s
##
## Weighting: none
##
@@ -367,8 +367,8 @@
<div class="sourceCode" id="cb15"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb15-1" data-line-number="1"><span class="kw">summary</span>(m.L2.DFOP, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.3
## R version used for fitting: 3.5.1
-## Date of fit: Fri Sep 14 06:39:31 2018
-## Date of summary: Fri Sep 14 06:39:31 2018
+## Date of fit: Fri Sep 14 11:36:16 2018
+## Date of summary: Fri Sep 14 11:36:16 2018
##
## Equations:
## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -377,7 +377,7 @@
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 336 model solutions performed in 0.742 s
+## Fitted with method Port using 336 model solutions performed in 0.833 s
##
## Weighting: none
##
@@ -459,8 +459,8 @@
<div class="sourceCode" id="cb21"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb21-1" data-line-number="1"><span class="kw">summary</span>(mm.L3[[<span class="st">"DFOP"</span>, <span class="dv">1</span>]])</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.3
## R version used for fitting: 3.5.1
-## Date of fit: Fri Sep 14 06:39:32 2018
-## Date of summary: Fri Sep 14 06:39:32 2018
+## Date of fit: Fri Sep 14 11:36:17 2018
+## Date of summary: Fri Sep 14 11:36:17 2018
##
## Equations:
## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -469,7 +469,7 @@
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 137 model solutions performed in 0.312 s
+## Fitted with method Port using 137 model solutions performed in 0.335 s
##
## Weighting: none
##
@@ -560,15 +560,15 @@
<div class="sourceCode" id="cb26"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb26-1" data-line-number="1"><span class="kw">summary</span>(mm.L4[[<span class="st">"SFO"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.3
## R version used for fitting: 3.5.1
-## Date of fit: Fri Sep 14 06:39:33 2018
-## Date of summary: Fri Sep 14 06:39:33 2018
+## Date of fit: Fri Sep 14 11:36:18 2018
+## Date of summary: Fri Sep 14 11:36:18 2018
##
## Equations:
## d_parent/dt = - k_parent_sink * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 46 model solutions performed in 0.097 s
+## Fitted with method Port using 46 model solutions performed in 0.099 s
##
## Weighting: none
##
@@ -620,15 +620,15 @@
<div class="sourceCode" id="cb28"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb28-1" data-line-number="1"><span class="kw">summary</span>(mm.L4[[<span class="st">"FOMC"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.3
## R version used for fitting: 3.5.1
-## Date of fit: Fri Sep 14 06:39:33 2018
-## Date of summary: Fri Sep 14 06:39:33 2018
+## Date of fit: Fri Sep 14 11:36:18 2018
+## Date of summary: Fri Sep 14 11:36:18 2018
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 66 model solutions performed in 0.143 s
+## Fitted with method Port using 66 model solutions performed in 0.152 s
##
## Weighting: none
##
diff --git a/docs/articles/FOCUS_Z.html b/docs/articles/FOCUS_Z.html
index 9753abd6..ff0bd537 100644
--- a/docs/articles/FOCUS_Z.html
+++ b/docs/articles/FOCUS_Z.html
@@ -29,7 +29,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.3</span>
+ <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.4</span>
</span>
</div>
diff --git a/docs/articles/compiled_models.html b/docs/articles/compiled_models.html
index d93fe9e1..a6598fd4 100644
--- a/docs/articles/compiled_models.html
+++ b/docs/articles/compiled_models.html
@@ -29,7 +29,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.3</span>
+ <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.4</span>
</span>
</div>
@@ -125,9 +125,9 @@
<a class="sourceLine" id="cb5-16" data-line-number="16">}</a></code></pre></div>
<pre><code>## Lade nötiges Paket: rbenchmark</code></pre>
<pre><code>## test replications elapsed relative user.self sys.self
-## 3 deSolve, compiled 3 2.110 1.000 2.108 0
-## 1 deSolve, not compiled 3 16.442 7.792 16.433 0
-## 2 Eigenvalue based 3 2.593 1.229 2.592 0
+## 3 deSolve, compiled 3 2.205 1.000 2.203 0
+## 1 deSolve, not compiled 3 17.206 7.803 17.196 0
+## 2 Eigenvalue based 3 2.829 1.283 2.828 0
## user.child sys.child
## 3 0 0
## 1 0 0
@@ -156,8 +156,8 @@
<a class="sourceLine" id="cb8-16" data-line-number="16">}</a></code></pre></div>
<pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre>
<pre><code>## test replications elapsed relative user.self sys.self
-## 2 deSolve, compiled 3 3.781 1.000 3.778 0
-## 1 deSolve, not compiled 3 34.742 9.189 34.725 0
+## 2 deSolve, compiled 3 3.874 1.000 3.866 0.004
+## 1 deSolve, not compiled 3 35.712 9.218 35.692 0.000
## user.child sys.child
## 2 0 0
## 1 0 0</code></pre>
diff --git a/docs/articles/index.html b/docs/articles/index.html
index dcaf33b8..e20ad2d4 100644
--- a/docs/articles/index.html
+++ b/docs/articles/index.html
@@ -58,7 +58,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.3</span>
+ <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.4</span>
</span>
</div>
diff --git a/docs/articles/mkin.html b/docs/articles/mkin.html
index 4d62b50d..bc76c2cf 100644
--- a/docs/articles/mkin.html
+++ b/docs/articles/mkin.html
@@ -29,7 +29,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.3</span>
+ <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.4</span>
</span>
</div>
diff --git a/docs/articles/twa.html b/docs/articles/twa.html
index 2952e887..a2f7f72a 100644
--- a/docs/articles/twa.html
+++ b/docs/articles/twa.html
@@ -29,7 +29,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.3</span>
+ <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.4</span>
</span>
</div>

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