Support logLik and AIC for manual weights

Static documentation rebuilt by pkgdown

6 files changed, 29 insertions, 29 deletions

diff --git a/docs/articles/FOCUS_D.html b/docs/articles/FOCUS_D.html
index b03e7612..0d463f63 100644
--- a/docs/articles/FOCUS_D.html
+++ b/docs/articles/FOCUS_D.html
@@ -84,7 +84,7 @@
       <h1>Example evaluation of FOCUS Example Dataset D</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2018-11-23</h4>
+            <h4 class="date">2018-11-26</h4>
       
       
       <div class="hidden name"><code>FOCUS_D.Rmd</code></div>
diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html
index e83664bc..dc562002 100644
--- a/docs/articles/FOCUS_L.html
+++ b/docs/articles/FOCUS_L.html
@@ -84,7 +84,7 @@
       <h1>Example evaluation of FOCUS Laboratory Data L1 to L3</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2018-11-23</h4>
+            <h4 class="date">2018-11-26</h4>
       
       
       <div class="hidden name"><code>FOCUS_L.Rmd</code></div>
@@ -110,8 +110,8 @@
 <a class="sourceLine" id="cb2-2" data-line-number="2"><span class="kw">summary</span>(m.L1.SFO)</a></code></pre></div>
 <pre><code>## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Fri Nov 23 20:47:25 2018 
-## Date of summary: Fri Nov 23 20:47:25 2018 
+## Date of fit:     Mon Nov 26 09:07:07 2018 
+## Date of summary: Mon Nov 26 09:07:07 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent
@@ -201,15 +201,15 @@
 <div class="sourceCode" id="cb7"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb7-1" data-line-number="1"><span class="kw">summary</span>(m.L1.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
 <pre><code>## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Fri Nov 23 20:47:26 2018 
-## Date of summary: Fri Nov 23 20:47:26 2018 
+## Date of fit:     Mon Nov 26 09:07:09 2018 
+## Date of summary: Mon Nov 26 09:07:09 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 611 model solutions performed in 1.467 s
+## Fitted with method Port using 611 model solutions performed in 1.481 s
 ## 
 ## Weighting: none
 ## 
@@ -296,15 +296,15 @@
 <div class="sourceCode" id="cb12"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb12-1" data-line-number="1"><span class="kw">summary</span>(m.L2.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
 <pre><code>## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Fri Nov 23 20:47:27 2018 
-## Date of summary: Fri Nov 23 20:47:27 2018 
+## Date of fit:     Mon Nov 26 09:07:10 2018 
+## Date of summary: Mon Nov 26 09:07:10 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 81 model solutions performed in 0.192 s
+## Fitted with method Port using 81 model solutions performed in 0.191 s
 ## 
 ## Weighting: none
 ## 
@@ -367,8 +367,8 @@
 <div class="sourceCode" id="cb15"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb15-1" data-line-number="1"><span class="kw">summary</span>(m.L2.DFOP, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
 <pre><code>## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Fri Nov 23 20:47:28 2018 
-## Date of summary: Fri Nov 23 20:47:28 2018 
+## Date of fit:     Mon Nov 26 09:07:11 2018 
+## Date of summary: Mon Nov 26 09:07:11 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -377,7 +377,7 @@
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 336 model solutions performed in 0.822 s
+## Fitted with method Port using 336 model solutions performed in 0.86 s
 ## 
 ## Weighting: none
 ## 
@@ -459,8 +459,8 @@
 <div class="sourceCode" id="cb21"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb21-1" data-line-number="1"><span class="kw">summary</span>(mm.L3[[<span class="st">"DFOP"</span>, <span class="dv">1</span>]])</a></code></pre></div>
 <pre><code>## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Fri Nov 23 20:47:29 2018 
-## Date of summary: Fri Nov 23 20:47:29 2018 
+## Date of fit:     Mon Nov 26 09:07:12 2018 
+## Date of summary: Mon Nov 26 09:07:12 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -469,7 +469,7 @@
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 137 model solutions performed in 0.336 s
+## Fitted with method Port using 137 model solutions performed in 0.339 s
 ## 
 ## Weighting: none
 ## 
@@ -560,8 +560,8 @@
 <div class="sourceCode" id="cb26"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb26-1" data-line-number="1"><span class="kw">summary</span>(mm.L4[[<span class="st">"SFO"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
 <pre><code>## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Fri Nov 23 20:47:29 2018 
-## Date of summary: Fri Nov 23 20:47:30 2018 
+## Date of fit:     Mon Nov 26 09:07:12 2018 
+## Date of summary: Mon Nov 26 09:07:13 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent
@@ -620,8 +620,8 @@
 <div class="sourceCode" id="cb28"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb28-1" data-line-number="1"><span class="kw">summary</span>(mm.L4[[<span class="st">"FOMC"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
 <pre><code>## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Fri Nov 23 20:47:30 2018 
-## Date of summary: Fri Nov 23 20:47:30 2018 
+## Date of fit:     Mon Nov 26 09:07:13 2018 
+## Date of summary: Mon Nov 26 09:07:13 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
diff --git a/docs/articles/mkin.html b/docs/articles/mkin.html
index 4ead1062..e73b989a 100644
--- a/docs/articles/mkin.html
+++ b/docs/articles/mkin.html
@@ -84,7 +84,7 @@
       <h1>Introduction to mkin</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2018-11-23</h4>
+            <h4 class="date">2018-11-26</h4>
       
       
       <div class="hidden name"><code>mkin.Rmd</code></div>
diff --git a/docs/articles/twa.html b/docs/articles/twa.html
index 8c053c10..6ba7e1a7 100644
--- a/docs/articles/twa.html
+++ b/docs/articles/twa.html
@@ -84,7 +84,7 @@
       <h1>Calculation of time weighted average concentrations with mkin</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2018-11-23</h4>
+            <h4 class="date">2018-11-26</h4>
       
       
       <div class="hidden name"><code>twa.Rmd</code></div>
diff --git a/docs/articles/web_only/FOCUS_Z.html b/docs/articles/web_only/FOCUS_Z.html
index 5215e039..6ebe3c73 100644
--- a/docs/articles/web_only/FOCUS_Z.html
+++ b/docs/articles/web_only/FOCUS_Z.html
@@ -84,7 +84,7 @@
       <h1>Example evaluation of FOCUS dataset Z</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2018-11-23</h4>
+            <h4 class="date">2018-11-26</h4>
       
       
       <div class="hidden name"><code>FOCUS_Z.Rmd</code></div>
diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html
index c47425fb..25a3a62e 100644
--- a/docs/articles/web_only/compiled_models.html
+++ b/docs/articles/web_only/compiled_models.html
@@ -84,7 +84,7 @@
       <h1>Performance benefit by using compiled model definitions in mkin</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2018-11-23</h4>
+            <h4 class="date">2018-11-26</h4>
       
       
       <div class="hidden name"><code>compiled_models.Rmd</code></div>
@@ -125,9 +125,9 @@
 <a class="sourceLine" id="cb5-16" data-line-number="16">}</a></code></pre></div>
 <pre><code>## Lade nötiges Paket: rbenchmark</code></pre>
 <pre><code>##                    test replications elapsed relative user.self sys.self
-## 3     deSolve, compiled            3   2.274    1.000     2.273        0
-## 1 deSolve, not compiled            3  17.686    7.777    17.676        0
-## 2      Eigenvalue based            3   2.800    1.231     2.799        0
+## 3     deSolve, compiled            3   2.296    1.000     2.295        0
+## 1 deSolve, not compiled            3  17.937    7.812    17.928        0
+## 2      Eigenvalue based            3   2.861    1.246     2.859        0
 ##   user.child sys.child
 ## 3          0         0
 ## 1          0         0
@@ -156,8 +156,8 @@
 <a class="sourceLine" id="cb8-16" data-line-number="16">}</a></code></pre></div>
 <pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre>
 <pre><code>##                    test replications elapsed relative user.self sys.self
-## 2     deSolve, compiled            3   4.038    1.000     4.035        0
-## 1 deSolve, not compiled            3  37.805    9.362    37.788        0
+## 2     deSolve, compiled            3   4.020    1.000     4.017        0
+## 1 deSolve, not compiled            3  37.721    9.383    37.704        0
 ##   user.child sys.child
 ## 2          0         0
 ## 1          0         0</code></pre>