Start online docs of the development version

1 files changed, 28 insertions, 22 deletions

diff --git a/docs/dev/articles/web_only/dimethenamid_2018.html b/docs/dev/articles/web_only/dimethenamid_2018.html
index 60f1ab5a..ec7f54d8 100644
--- a/docs/dev/articles/web_only/dimethenamid_2018.html
+++ b/docs/dev/articles/web_only/dimethenamid_2018.html
@@ -34,7 +34,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../../index.html">mkin</a>
-        <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.1.2</span>
+        <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.2</span>
       </span>
     </div>
 
@@ -63,19 +63,25 @@
       <a href="../../articles/web_only/dimethenamid_2018.html">Example evaluations of dimethenamid data from 2018 with nonlinear mixed-effects models</a>
     </li>
     <li>
-      <a href="../../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
+      <a href="../../articles/web_only/multistart.html">Short demo of the multistart method</a>
     </li>
     <li>
       <a href="../../articles/web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a>
     </li>
     <li>
+      <a href="../../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
+    </li>
+    <li>
       <a href="../../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
     </li>
     <li>
       <a href="../../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
     </li>
     <li>
-      <a href="../../articles/web_only/benchmarks.html">Some benchmark timings</a>
+      <a href="../../articles/web_only/benchmarks.html">Benchmark timings for mkin</a>
+    </li>
+    <li>
+      <a href="../../articles/web_only/saem_benchmarks.html">Benchmark timings for saem.mmkin</a>
     </li>
   </ul>
 </li>
@@ -106,7 +112,7 @@
       <h1 data-toc-skip>Example evaluations of the dimethenamid data from 2018</h1>
                         <h4 data-toc-skip class="author">Johannes Ranke</h4>
             
-            <h4 data-toc-skip class="date">Last change 1 July 2022, built on 16 Sep 2022</h4>
+            <h4 data-toc-skip class="date">Last change 1 July 2022, built on 24 Nov 2022</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/web_only/dimethenamid_2018.rmd" class="external-link"><code>vignettes/web_only/dimethenamid_2018.rmd</code></a></small>
       <div class="hidden name"><code>dimethenamid_2018.rmd</code></div>
@@ -366,7 +372,7 @@ DFOP tc more iterations 665.88 663.80</code></pre>
 <span><span class="op">)</span></span>
 <span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">AIC_parent_saemix_methods_defaults</span><span class="op">)</span></span></code></pre></div>
 <pre><code>    is     gq    lin 
-668.27 718.36 666.49 </code></pre>
+669.77 669.36 670.95 </code></pre>
 </div>
 </div>
 <div class="section level3">
@@ -437,7 +443,7 @@ DFOP tc more iterations 665.88 663.80</code></pre>
 </h2>
 <div class="sourceCode" id="cb32"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/sessionInfo.html" class="external-link">sessionInfo</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
-<pre><code>R version 4.2.1 (2022-06-23)
+<pre><code>R version 4.2.2 (2022-10-31)
 Platform: x86_64-pc-linux-gnu (64-bit)
 Running under: Debian GNU/Linux 11 (bullseye)
 
@@ -457,24 +463,24 @@ attached base packages:
 [1] stats     graphics  grDevices utils     datasets  methods   base     
 
 other attached packages:
-[1] nlme_3.1-158 mkin_1.1.2   knitr_1.39  
+[1] saemix_3.2   npde_3.2     nlme_3.1-160 mkin_1.2.2   knitr_1.41  
 
 loaded via a namespace (and not attached):
- [1] deSolve_1.33       zoo_1.8-10         tidyselect_1.1.2   xfun_0.31         
- [5] bslib_0.4.0        purrr_0.3.4        lattice_0.20-45    colorspace_2.0-3  
- [9] vctrs_0.4.1        generics_0.1.3     htmltools_0.5.3    yaml_2.3.5        
-[13] utf8_1.2.2         rlang_1.0.4        pkgdown_2.0.6      saemix_3.1        
-[17] jquerylib_0.1.4    pillar_1.8.0       glue_1.6.2         DBI_1.1.3         
-[21] lifecycle_1.0.1    stringr_1.4.0      munsell_0.5.0      gtable_0.3.0      
-[25] ragg_1.2.2         memoise_2.0.1      evaluate_0.15      npde_3.2          
-[29] fastmap_1.1.0      lmtest_0.9-40      parallel_4.2.1     fansi_1.0.3       
-[33] highr_0.9          KernSmooth_2.23-20 scales_1.2.0       cachem_1.0.6      
-[37] desc_1.4.1         jsonlite_1.8.0     systemfonts_1.0.4  fs_1.5.2          
-[41] textshaping_0.3.6  gridExtra_2.3      ggplot2_3.3.6      digest_0.6.29     
-[45] stringi_1.7.8      dplyr_1.0.9        grid_4.2.1         rprojroot_2.0.3   
-[49] cli_3.3.0          tools_4.2.1        magrittr_2.0.3     sass_0.4.2        
-[53] tibble_3.1.8       pkgconfig_2.0.3    assertthat_0.2.1   rmarkdown_2.14.3  
-[57] mclust_5.4.10      R6_2.5.1           compiler_4.2.1    </code></pre>
+ [1] deSolve_1.34      zoo_1.8-11        tidyselect_1.2.0  xfun_0.35        
+ [5] bslib_0.4.1       purrr_0.3.5       lattice_0.20-45   colorspace_2.0-3 
+ [9] vctrs_0.5.1       generics_0.1.3    htmltools_0.5.3   yaml_2.3.6       
+[13] utf8_1.2.2        rlang_1.0.6       pkgdown_2.0.6     jquerylib_0.1.4  
+[17] pillar_1.8.1      glue_1.6.2        DBI_1.1.3         lifecycle_1.0.3  
+[21] stringr_1.4.1     munsell_0.5.0     gtable_0.3.1      ragg_1.2.4       
+[25] codetools_0.2-18  memoise_2.0.1     evaluate_0.18     fastmap_1.1.0    
+[29] lmtest_0.9-40     parallel_4.2.2    fansi_1.0.3       highr_0.9        
+[33] scales_1.2.1      cachem_1.0.6      desc_1.4.2        jsonlite_1.8.3   
+[37] systemfonts_1.0.4 fs_1.5.2          textshaping_0.3.6 gridExtra_2.3    
+[41] ggplot2_3.4.0     digest_0.6.30     stringi_1.7.8     dplyr_1.0.10     
+[45] grid_4.2.2        rprojroot_2.0.3   cli_3.4.1         tools_4.2.2      
+[49] magrittr_2.0.3    sass_0.4.3        tibble_3.1.8      pkgconfig_2.0.3  
+[53] assertthat_0.2.1  rmarkdown_2.18    R6_2.5.1          mclust_6.0.0     
+[57] compiler_4.2.2   </code></pre>
 </div>
 <div class="section level2">
 <h2 id="references">References<a class="anchor" aria-label="anchor" href="#references"></a>