Finished 'summary.nlmixr.mmkin', checks, docs

1 files changed, 14 insertions, 20 deletions

diff --git a/docs/dev/news/index.html b/docs/dev/news/index.html
index 10585403..234ba02f 100644
--- a/docs/dev/news/index.html
+++ b/docs/dev/news/index.html
@@ -71,7 +71,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">mkin</a>
-        <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.4.9000</span>
+        <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.5</span>
       </span>
     </div>
 
@@ -141,33 +141,27 @@
       <small>Source: <a href='https://github.com/jranke/mkin/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
     </div>
 
-    <div id="mkin-1049000" class="section level1">
-<h1 class="page-header" data-toc-text="1.0.4.9000">
-<a href="#mkin-1049000" class="anchor"></a>mkin 1.0.4.9000</h1>
-<div id="general" class="section level2">
-<h2 class="hasAnchor">
-<a href="#general" class="anchor"></a>General</h2>
-<ul>
-<li>Switch to a versioning scheme where the fourth version component indicates development versions</li>
-</ul>
-</div>
+    <div id="mkin-105-unreleased" class="section level1">
+<h1 class="page-header" data-toc-text="1.0.5">
+<a href="#mkin-105-unreleased" class="anchor"></a>mkin 1.0.5 (unreleased)</h1>
 <div id="mixed-effects-models" class="section level2">
 <h2 class="hasAnchor">
 <a href="#mixed-effects-models" class="anchor"></a>Mixed-effects models</h2>
 <ul>
-<li><p>Reintroduce the interface to the current development version of saemix, in particular:</p></li>
-<li><p>‘saemix_model’ and ‘saemix_data’: Helper functions to set up nonlinear mixed-effects models for mmkin row objects</p></li>
-<li><p>‘saem’: generic function to fit saemix models using ‘saemix_model’ and ‘saemix_data’, with a generator ‘saem.mmkin’, summary and plot methods</p></li>
-<li><p>‘mean_degparms’: New argument ‘test_log_parms’ that makes the function only consider log-transformed parameters where the untransformed parameters pass the t-test for a certain confidence level. This can be used to check more plausible parameters for ‘saem’</p></li>
+<li><p>Introduce an interface to nlmixr, supporting estimation methods ‘saem’ and ‘focei’: S3 method ‘nlmixr.mmkin’ using the helper functions ‘nlmixr_model’ and ‘nlmixr_data’ to set up nlmixr models for mmkin row objects, with summary and plot methods.</p></li>
+<li><p>Reintroduce the interface to current development versions (not on CRAN) of saemix, in particular the generic function ‘saem’ with a generator ‘saem.mmkin’, currently using ‘saemix_model’ and ‘saemix_data’, summary and plot methods</p></li>
+<li><p>‘mean_degparms’: New argument ‘test_log_parms’ that makes the function only consider log-transformed parameters where the untransformed parameters pass the t-test for a certain confidence level. This can be used to obtain more plausible starting parameters for the different mixed-effects model backends</p></li>
+<li><p>‘plot.mixed.mmkin’: Gains arguments ‘test_log_parms’ and ‘conf.level’</p></li>
 </ul>
 </div>
 </div>
-    <div id="mkin-104-unreleased" class="section level1">
+    <div id="mkin-104-2021-04-20" class="section level1">
 <h1 class="page-header" data-toc-text="1.0.4">
-<a href="#mkin-104-unreleased" class="anchor"></a>mkin 1.0.4 (Unreleased)</h1>
+<a href="#mkin-104-2021-04-20" class="anchor"></a>mkin 1.0.4 (2021-04-20)</h1>
 <ul>
-<li><p>‘plot.mixed.mmkin’: Reset graphical parameters on exit</p></li>
 <li><p>All plotting functions setting graphical parameters: Use on.exit() for resetting graphical parameters</p></li>
+<li><p>‘plot.mkinfit’: Use xlab and xlim for the residual plot if show_residuals is TRUE</p></li>
+<li><p>‘mmkin’: Use cores = 1 per default on Windows to make it easier for first time users</p></li>
 </ul>
 </div>
     <div id="mkin-103-2021-02-15" class="section level1">
@@ -198,9 +192,9 @@
     <div id="mkin-100-2021-02-03" class="section level1">
 <h1 class="page-header" data-toc-text="1.0.0">
 <a href="#mkin-100-2021-02-03" class="anchor"></a>mkin 1.0.0 (2021-02-03)</h1>
-<div id="general-1" class="section level2">
+<div id="general" class="section level2">
 <h2 class="hasAnchor">
-<a href="#general-1" class="anchor"></a>General</h2>
+<a href="#general" class="anchor"></a>General</h2>
 <ul>
 <li><p>‘mkinmod’ models gain arguments ‘name’ and ‘dll_dir’ which, in conjunction with a current version of the ‘inline’ package, make it possible to still use the DLL used for fast ODE solutions with ‘deSolve’ after saving and restoring the ‘mkinmod’ object.</p></li>
 <li><p>‘mkindsg’ R6 class for groups of ‘mkinds’ datasets with metadata</p></li>