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authorJohannes Ranke <jranke@uni-bremen.de>2020-12-19 12:24:43 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2020-12-19 12:24:43 +0100
commite2aa453b1d5535ceb2d0d7b042d2c3b68c6298d1 (patch)
tree0356a7012dd13c3083e9955f3e9769071523386f /docs/dev/reference/f_time_norm_focus.html
parente25f0194736a090914c10a9f374946c0b89adc5b (diff)
Update docs
Diffstat (limited to 'docs/dev/reference/f_time_norm_focus.html')
-rw-r--r--docs/dev/reference/f_time_norm_focus.html34
1 files changed, 18 insertions, 16 deletions
diff --git a/docs/dev/reference/f_time_norm_focus.html b/docs/dev/reference/f_time_norm_focus.html
index a95234a7..3421043d 100644
--- a/docs/dev/reference/f_time_norm_focus.html
+++ b/docs/dev/reference/f_time_norm_focus.html
@@ -122,7 +122,7 @@ in Appendix 8 to the FOCUS kinetics guidance (FOCUS 2014, p. 369)." />
<ul class="nav navbar-nav navbar-right">
<li>
<a href="https://github.com/jranke/mkin/">
- <span class="fab fa fab fa-github fa-lg"></span>
+ <span class="fab fa-github fa-lg"></span>
</a>
</li>
@@ -166,7 +166,7 @@ in Appendix 8 to the FOCUS kinetics guidance (FOCUS 2014, p. 369).</p>
<span class='co'># S3 method for mkindsg</span>
<span class='fu'>f_time_norm_focus</span><span class='op'>(</span>
<span class='va'>object</span>,
- study_moisture_ref_source <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span><span class='st'>"meta"</span>, <span class='st'>"focus"</span><span class='op'>)</span>,
+ study_moisture_ref_source <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span><span class='st'>"auto"</span>, <span class='st'>"meta"</span>, <span class='st'>"focus"</span><span class='op'>)</span>,
Q10 <span class='op'>=</span> <span class='fl'>2.58</span>,
walker <span class='op'>=</span> <span class='fl'>0.7</span>,
f_na <span class='op'>=</span> <span class='cn'>NA</span>,
@@ -213,7 +213,9 @@ for complete cases will be returned.</p></td>
<tr>
<th>study_moisture_ref_source</th>
<td><p>Source for the reference value
-used to calculate the study moisture</p></td>
+used to calculate the study moisture. If 'auto', preference is given
+to a reference moisture given in the meta information, otherwise
+the focus soil moisture for the soil class is used</p></td>
</tr>
</table>
@@ -237,22 +239,22 @@ Version 1.1, 18 December 2014
<pre class="examples"><div class='input'><span class='fu'>f_time_norm_focus</span><span class='op'>(</span><span class='fl'>25</span>, <span class='fl'>20</span>, <span class='fl'>25</span><span class='op'>)</span> <span class='co'># 1.37, compare FOCUS 2014 p. 184</span>
</div><div class='output co'>#&gt; [1] 1.373956</div><div class='input'>
<span class='va'>D24_2014</span><span class='op'>$</span><span class='va'>meta</span>
-</div><div class='output co'>#&gt; study usda_soil_type study_moisture_ref_type rel_moisture
-#&gt; 1 Cohen 1991 Silt loam &lt;NA&gt; NA
-#&gt; 2 Liu and Adelfinskaya 2011 Silt loam pF1 0.5
-#&gt; 3 Liu and Adelfinskaya 2011 Loam pF1 0.5
-#&gt; 4 Liu and Adelfinskaya 2011 Loam pF1 0.5
-#&gt; 5 Liu and Adelfinskaya 2011 Loamy sand pF1 0.5
-#&gt; temperature
-#&gt; 1 25
-#&gt; 2 20
-#&gt; 3 20
-#&gt; 4 20
-#&gt; 5 20</div><div class='input'><span class='co'># No moisture normalisation in the first dataset, so we use f_na = 1 to get</span>
+</div><div class='output co'>#&gt; study usda_soil_type study_moisture_ref_type
+#&gt; Mississippi Cohen 1991 Silt loam &lt;NA&gt;
+#&gt; Fayette Liu and Adelfinskaya 2011 Silt loam pF1
+#&gt; RefSol 03-G Liu and Adelfinskaya 2011 Loam pF1
+#&gt; Site E1 Liu and Adelfinskaya 2011 Loam pF1
+#&gt; Site I2 Liu and Adelfinskaya 2011 Loamy sand pF1
+#&gt; rel_moisture temperature
+#&gt; Mississippi NA 25
+#&gt; Fayette 0.5 20
+#&gt; RefSol 03-G 0.5 20
+#&gt; Site E1 0.5 20
+#&gt; Site I2 0.5 20</div><div class='input'><span class='co'># No moisture normalisation in the first dataset, so we use f_na = 1 to get</span>
<span class='co'># temperature only normalisation as in the EU evaluation</span>
<span class='fu'>f_time_norm_focus</span><span class='op'>(</span><span class='va'>D24_2014</span>, study_moisture_ref_source <span class='op'>=</span> <span class='st'>"focus"</span>, f_na <span class='op'>=</span> <span class='fl'>1</span><span class='op'>)</span>
</div><div class='output co'>#&gt; $time_norm was set to
-#&gt; [1] 1.6062378 0.7118732 0.7156063 0.7156063 0.8977124</div><div class='output co'>#&gt; [1] 1.6062378 0.7118732 0.7156063 0.7156063 0.8977124</div></pre>
+#&gt; [1] 1.6062378 0.7118732 0.7156063 0.7156063 0.8977124</div></pre>
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