diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2020-12-19 12:24:43 +0100 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2020-12-19 12:24:43 +0100 |
| commit | e2aa453b1d5535ceb2d0d7b042d2c3b68c6298d1 (patch) | |
| tree | 0356a7012dd13c3083e9955f3e9769071523386f /docs/dev/reference/f_time_norm_focus.html | |
| parent | e25f0194736a090914c10a9f374946c0b89adc5b (diff) | |
Update docs
Diffstat (limited to 'docs/dev/reference/f_time_norm_focus.html')
| -rw-r--r-- | docs/dev/reference/f_time_norm_focus.html | 34 |
1 files changed, 18 insertions, 16 deletions
diff --git a/docs/dev/reference/f_time_norm_focus.html b/docs/dev/reference/f_time_norm_focus.html index a95234a7..3421043d 100644 --- a/docs/dev/reference/f_time_norm_focus.html +++ b/docs/dev/reference/f_time_norm_focus.html @@ -122,7 +122,7 @@ in Appendix 8 to the FOCUS kinetics guidance (FOCUS 2014, p. 369)." /> <ul class="nav navbar-nav navbar-right"> <li> <a href="https://github.com/jranke/mkin/"> - <span class="fab fa fab fa-github fa-lg"></span> + <span class="fab fa-github fa-lg"></span> </a> </li> @@ -166,7 +166,7 @@ in Appendix 8 to the FOCUS kinetics guidance (FOCUS 2014, p. 369).</p> <span class='co'># S3 method for mkindsg</span> <span class='fu'>f_time_norm_focus</span><span class='op'>(</span> <span class='va'>object</span>, - study_moisture_ref_source <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span><span class='st'>"meta"</span>, <span class='st'>"focus"</span><span class='op'>)</span>, + study_moisture_ref_source <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span><span class='st'>"auto"</span>, <span class='st'>"meta"</span>, <span class='st'>"focus"</span><span class='op'>)</span>, Q10 <span class='op'>=</span> <span class='fl'>2.58</span>, walker <span class='op'>=</span> <span class='fl'>0.7</span>, f_na <span class='op'>=</span> <span class='cn'>NA</span>, @@ -213,7 +213,9 @@ for complete cases will be returned.</p></td> <tr> <th>study_moisture_ref_source</th> <td><p>Source for the reference value -used to calculate the study moisture</p></td> +used to calculate the study moisture. If 'auto', preference is given +to a reference moisture given in the meta information, otherwise +the focus soil moisture for the soil class is used</p></td> </tr> </table> @@ -237,22 +239,22 @@ Version 1.1, 18 December 2014 <pre class="examples"><div class='input'><span class='fu'>f_time_norm_focus</span><span class='op'>(</span><span class='fl'>25</span>, <span class='fl'>20</span>, <span class='fl'>25</span><span class='op'>)</span> <span class='co'># 1.37, compare FOCUS 2014 p. 184</span> </div><div class='output co'>#> [1] 1.373956</div><div class='input'> <span class='va'>D24_2014</span><span class='op'>$</span><span class='va'>meta</span> -</div><div class='output co'>#> study usda_soil_type study_moisture_ref_type rel_moisture -#> 1 Cohen 1991 Silt loam <NA> NA -#> 2 Liu and Adelfinskaya 2011 Silt loam pF1 0.5 -#> 3 Liu and Adelfinskaya 2011 Loam pF1 0.5 -#> 4 Liu and Adelfinskaya 2011 Loam pF1 0.5 -#> 5 Liu and Adelfinskaya 2011 Loamy sand pF1 0.5 -#> temperature -#> 1 25 -#> 2 20 -#> 3 20 -#> 4 20 -#> 5 20</div><div class='input'><span class='co'># No moisture normalisation in the first dataset, so we use f_na = 1 to get</span> +</div><div class='output co'>#> study usda_soil_type study_moisture_ref_type +#> Mississippi Cohen 1991 Silt loam <NA> +#> Fayette Liu and Adelfinskaya 2011 Silt loam pF1 +#> RefSol 03-G Liu and Adelfinskaya 2011 Loam pF1 +#> Site E1 Liu and Adelfinskaya 2011 Loam pF1 +#> Site I2 Liu and Adelfinskaya 2011 Loamy sand pF1 +#> rel_moisture temperature +#> Mississippi NA 25 +#> Fayette 0.5 20 +#> RefSol 03-G 0.5 20 +#> Site E1 0.5 20 +#> Site I2 0.5 20</div><div class='input'><span class='co'># No moisture normalisation in the first dataset, so we use f_na = 1 to get</span> <span class='co'># temperature only normalisation as in the EU evaluation</span> <span class='fu'>f_time_norm_focus</span><span class='op'>(</span><span class='va'>D24_2014</span>, study_moisture_ref_source <span class='op'>=</span> <span class='st'>"focus"</span>, f_na <span class='op'>=</span> <span class='fl'>1</span><span class='op'>)</span> </div><div class='output co'>#> $time_norm was set to -#> [1] 1.6062378 0.7118732 0.7156063 0.7156063 0.8977124</div><div class='output co'>#> [1] 1.6062378 0.7118732 0.7156063 0.7156063 0.8977124</div></pre> +#> [1] 1.6062378 0.7118732 0.7156063 0.7156063 0.8977124</div></pre> </div> <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar"> <nav id="toc" data-toggle="toc" class="sticky-top"> |