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authorJohannes Ranke <jranke@uni-bremen.de>2022-11-03 13:54:53 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2022-11-03 13:54:53 +0100
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+These sheets are selected based on the contents of a sheet 'Datasets', with
+a column called 'Dataset Number', containing numbers identifying the dataset
+sheets to be read in. In the second column there must be a grouping
+variable, which will often be named 'Soil'. Optionally, time normalization
+factors can be given in columns named 'Temperature' and 'Moisture'."><meta name="robots" content="noindex"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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+ <h1>Read datasets and relevant meta information from a spreadsheet file</h1>
+ <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/R/read_spreadsheet.R" class="external-link"><code>R/read_spreadsheet.R</code></a></small>
+ <div class="hidden name"><code>read_spreadsheet.Rd</code></div>
+ </div>
+
+ <div class="ref-description">
+ <p>This function imports one dataset from each sheet of a spreadsheet file.
+These sheets are selected based on the contents of a sheet 'Datasets', with
+a column called 'Dataset Number', containing numbers identifying the dataset
+sheets to be read in. In the second column there must be a grouping
+variable, which will often be named 'Soil'. Optionally, time normalization
+factors can be given in columns named 'Temperature' and 'Moisture'.</p>
+ </div>
+
+ <div id="ref-usage">
+ <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">read_spreadsheet</span><span class="op">(</span></span>
+<span> <span class="va">path</span>,</span>
+<span> valid_datasets <span class="op">=</span> <span class="st">"all"</span>,</span>
+<span> parent_only <span class="op">=</span> <span class="cn">TRUE</span>,</span>
+<span> normalize <span class="op">=</span> <span class="cn">TRUE</span></span>
+<span><span class="op">)</span></span></code></pre></div>
+ </div>
+
+ <div id="arguments">
+ <h2>Arguments</h2>
+ <dl><dt>path</dt>
+<dd><p>Absolute or relative path to the spreadsheet file</p></dd>
+
+
+<dt>valid_datasets</dt>
+<dd><p>Optional numeric index of the valid datasets, default is
+to use all datasets</p></dd>
+
+
+<dt>parent_only</dt>
+<dd><p>Should only the parent data be used?</p></dd>
+
+
+<dt>normalize</dt>
+<dd><p>Should the time scale be normalized using temperature
+and moisture normalisation factors in the sheet 'Datasets'?</p></dd>
+
+</dl></div>
+ <div id="details">
+ <h2>Details</h2>
+ <p>There must be a sheet 'Compounds', with columns 'Name' and 'Acronym'.
+The first row read after the header read in from this sheet is assumed
+to contain name and acronym of the parent compound.</p>
+<p>The dataset sheets should be named using the dataset numbers read in from
+the 'Datasets' sheet, i.e. '1', '2', ... . In each dataset sheet, name
+of the observed variable (e.g. the acronym of the parent compound or
+one of its transformation products) should be in the first column,
+the time values should be in the second colum, and the observed value
+in the third column.</p>
+<p>In case relevant covariate data are available, they should be given
+in a sheet 'Covariates', containing one line for each value of the grouping
+variable specified in 'Datasets'. These values should be in the first
+column and the column must have the same name as the second column in
+'Datasets'. Covariates will be read in from columns four and higher.
+Their names should preferably not contain special characters like spaces,
+so they can be easily used for specifying covariate models.</p>
+<p>An similar data structure is defined as the R6 class <a href="mkindsg.html">mkindsg</a>, but
+is probably more complicated to use.</p>
+ </div>
+
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