Static documentation rebuilt by pkgdown

1 files changed, 21 insertions, 27 deletions

diff --git a/docs/reference/CAKE_export.html b/docs/reference/CAKE_export.html
index 52d00ac2..47536237 100644
--- a/docs/reference/CAKE_export.html
+++ b/docs/reference/CAKE_export.html
@@ -8,11 +8,13 @@
 
 <title>Export a list of datasets format to a CAKE study file — CAKE_export • mkin</title>
 
+
 <!-- jquery -->
 <script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.3.1/jquery.min.js" integrity="sha256-FgpCb/KJQlLNfOu91ta32o/NMZxltwRo8QtmkMRdAu8=" crossorigin="anonymous"></script>
 <!-- Bootstrap -->
 
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+
 <script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha256-U5ZEeKfGNOja007MMD3YBI0A3OSZOQbeG6z2f2Y0hu8=" crossorigin="anonymous"></script>
 
 <!-- Font Awesome icons -->
@@ -32,14 +34,15 @@
 
 
 
-<meta property="og:title" content="Export a list of datasets format to a CAKE study file — CAKE_export" />
 
-<meta property="og:description" content="In addition to the datasets, the pathways in the degradation
-  model can be specified as well." />
+<meta property="og:title" content="Export a list of datasets format to a CAKE study file — CAKE_export" />
+<meta property="og:description" content="In addition to the datasets, the pathways in the degradation model can be
+specified as well." />
 <meta name="twitter:card" content="summary" />
 
 
 
+
 <!-- mathjax -->
 <script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script>
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@@ -110,7 +113,6 @@
   <a href="../news/index.html">News</a>
 </li>
       </ul>
-      
       <ul class="nav navbar-nav navbar-right">
         
       </ul>
@@ -132,46 +134,40 @@
     </div>
 
     <div class="ref-description">
-    
-    <p>In addition to the datasets, the pathways in the degradation
-  model can be specified as well.</p>
-    
+    <p>In addition to the datasets, the pathways in the degradation model can be
+specified as well.</p>
     </div>
 
-    <pre class="usage"><span class='fu'>CAKE_export</span>(<span class='no'>ds</span>, <span class='kw'>map</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='st'>"Parent"</span>),
-  <span class='kw'>links</span> <span class='kw'>=</span> <span class='fl'>NA</span>,
+    <pre class="usage"><span class='fu'>CAKE_export</span>(<span class='no'>ds</span>, <span class='kw'>map</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='st'>"Parent"</span>), <span class='kw'>links</span> <span class='kw'>=</span> <span class='fl'>NA</span>,
   <span class='kw'>filename</span> <span class='kw'>=</span> <span class='st'>"CAKE_export.csf"</span>, <span class='kw'>path</span> <span class='kw'>=</span> <span class='st'>"."</span>, <span class='kw'>overwrite</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>,
-  <span class='kw'>study</span> <span class='kw'>=</span> <span class='st'>"Codlemone aerobic soil degradation"</span>,
-  <span class='kw'>description</span> <span class='kw'>=</span> <span class='st'>""</span>,
-  <span class='kw'>time_unit</span> <span class='kw'>=</span> <span class='st'>"days"</span>,
-  <span class='kw'>res_unit</span> <span class='kw'>=</span> <span class='st'>"% AR"</span>,
-  <span class='kw'>comment</span> <span class='kw'>=</span> <span class='st'>"Created using mkin::CAKE_export"</span>,
-  <span class='kw'>date</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/Sys.time.html'>Sys.Date</a></span>(),
+  <span class='kw'>study</span> <span class='kw'>=</span> <span class='st'>"Codlemone aerobic soil degradation"</span>, <span class='kw'>description</span> <span class='kw'>=</span> <span class='st'>""</span>,
+  <span class='kw'>time_unit</span> <span class='kw'>=</span> <span class='st'>"days"</span>, <span class='kw'>res_unit</span> <span class='kw'>=</span> <span class='st'>"% AR"</span>,
+  <span class='kw'>comment</span> <span class='kw'>=</span> <span class='st'>"Created using mkin::CAKE_export"</span>, <span class='kw'>date</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/Sys.time.html'>Sys.Date</a></span>(),
   <span class='kw'>optimiser</span> <span class='kw'>=</span> <span class='st'>"IRLS"</span>)</pre>
-    
+
     <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
     <table class="ref-arguments">
     <colgroup><col class="name" /><col class="desc" /></colgroup>
     <tr>
       <th>ds</th>
       <td><p>A named list of datasets in long format as compatible with
-    <code><a href='mkinfit.html'>mkinfit</a></code>.</p></td>
+<code><a href='mkinfit.html'>mkinfit</a></code>.</p></td>
     </tr>
     <tr>
       <th>map</th>
       <td><p>A character vector with CAKE compartment names (Parent, A1, ...),
-    named with the names used in the list of datasets.</p></td>
+named with the names used in the list of datasets.</p></td>
     </tr>
     <tr>
       <th>links</th>
       <td><p>An optional character vector of target compartments, named with
-    the names of the source compartments. In order to make this
-    easier, the names are used as in the datasets supplied.</p></td>
+the names of the source compartments. In order to make this easier, the
+names are used as in the datasets supplied.</p></td>
     </tr>
     <tr>
       <th>filename</th>
-      <td><p>Where to write the result. Should end in .csf in order to be compatible
-    with CAKE.</p></td>
+      <td><p>Where to write the result. Should end in .csf in order to be
+compatible with CAKE.</p></td>
     </tr>
     <tr>
       <th>path</th>
@@ -210,20 +206,18 @@
       <td><p>Can be OLS or IRLS.</p></td>
     </tr>
     </table>
-    
+
     <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
 
     <p>The function is called for its side effect.</p>
-    
 
   </div>
   <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
     <h2>Contents</h2>
     <ul class="nav nav-pills nav-stacked">
       <li><a href="#arguments">Arguments</a></li>
-      
       <li><a href="#value">Value</a></li>
-          </ul>
+    </ul>
 
     <h2>Author</h2>
     <p>Johannes Ranke</p>