Static documentation rebuilt by pkgdown::build_site(run_dont_run = TRUE)

Again with the jranke branch of jranke/pkgdown

1 files changed, 28 insertions, 16 deletions

diff --git a/docs/reference/Extract.mmkin.html b/docs/reference/Extract.mmkin.html
index 6a75a530..1b198233 100644
--- a/docs/reference/Extract.mmkin.html
+++ b/docs/reference/Extract.mmkin.html
@@ -49,13 +49,28 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="../reference/index.html">Reference</a>
+  <a href="../reference/index.html">Function reference</a>
 </li>
-<li>
-  <a href="../articles/index.html">Articles</a>
-</li>
-<li>
-  <a href="../news/index.html">News</a>
+<li class="dropdown">
+  <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
+    Articles
+     
+    <span class="caret"></span>
+  </a>
+  <ul class="dropdown-menu" role="menu">
+    <li>
+      <a href="../articles/mkin.html">Introduction to mkin</a>
+    </li>
+    <li>
+      <a href="../articles/FOCUS_D.html">Example evaluation of FOCUS Example Dataset D</a>
+    </li>
+    <li>
+      <a href="../articles/FOCUS_L.html">Example evaluation of FOCUS Laboratory Data L1 to L3</a>
+    </li>
+    <li>
+      <a href="../articles/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a>
+    </li>
+  </ul>
 </li>
       </ul>
       
@@ -128,12 +143,7 @@
   <span class='fu'>head</span>(
     <span class='co'># This extracts an mkinfit object with lots of components</span>
     <span class='no'>fits</span><span class='kw'>[[</span><span class='st'>"FOMC"</span>, <span class='st'>"B"</span>]]
-  )</div><div class='output co'>#&gt; <span class='message'></span>
-#&gt; <span class='message'>Attaching package: ‘utils’</span></div><div class='output co'>#&gt; <span class='message'>The following objects are masked from ‘devtools_shims’:</span>
-#&gt; <span class='message'></span>
-#&gt; <span class='message'>    ?, help</span></div><div class='output co'>#&gt; <span class='message'>The following object is masked from ‘package:inline’:</span>
-#&gt; <span class='message'></span>
-#&gt; <span class='message'>    package.skeleton</span></div><div class='output co'>#&gt; $par
+  )</div><div class='output co'>#&gt; $par
 #&gt;  parent_0 log_alpha  log_beta 
 #&gt; 99.666193  2.549849  5.050586 
 #&gt; 
@@ -229,7 +239,7 @@
 #&gt; 
 #&gt; $time
 #&gt;    user  system elapsed 
-#&gt;   0.068   0.000   0.070 
+#&gt;   0.064   0.000   0.066 
 #&gt; 
 #&gt; $mkinmod
 #&gt; &lt;mkinmod&gt; model generated with
@@ -238,6 +248,8 @@
 #&gt; $parent
 #&gt; $type: SFO; $sink: TRUE
 #&gt; Coefficient matrix $coefmat available
+#&gt; Differential equations:
+#&gt; d_parent/dt = - k_parent_sink * parent
 #&gt; 
 #&gt; $observed
 #&gt;     name time value
@@ -416,7 +428,7 @@
 #&gt;     }
 #&gt;     return(mC)
 #&gt; }
-#&gt; &lt;environment: 0x3a3e8a8&gt;
+#&gt; &lt;environment: 0x374d908&gt;
 #&gt; 
 #&gt; $cost_notrans
 #&gt; function (P) 
@@ -438,7 +450,7 @@
 #&gt;         scaleVar = scaleVar)
 #&gt;     return(mC)
 #&gt; }
-#&gt; &lt;environment: 0x3a3e8a8&gt;
+#&gt; &lt;environment: 0x374d908&gt;
 #&gt; 
 #&gt; $hessian_notrans
 #&gt;                   parent_0 k_parent_sink
@@ -501,7 +513,7 @@
 #&gt; 99.17407 
 #&gt; 
 #&gt; $date
-#&gt; [1] &quot;Fri Nov 18 16:03:57 2016&quot;
+#&gt; [1] &quot;Fri Nov 18 16:45:27 2016&quot;
 #&gt; 
 #&gt; attr(,&quot;class&quot;)
 #&gt; [1] &quot;mkinfit&quot; &quot;modFit&quot;